Basic Information
Locus ID:
Lb4G23836
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
TPL-binding domain in jasmonate signalling
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr04 | 97113731 | 97124698 | - | Lb4G23836 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.34 | 228,223.77 Da | 41.52 | 68.60 | -0.71 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd15532 | PHD2_CHD_II | 1552 | 1591 | 3.23108E-15 | - |
| CDD | cd15532 | PHD2_CHD_II | 1552 | 1591 | 3.23108E-15 | - |
| Pfam | PF16135 | Tify domain binding domain | 1474 | 1524 | 7.7E-19 | IPR032308 |
| Pfam | PF16135 | Tify domain binding domain | 1474 | 1524 | 7.7E-19 | IPR032308 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 1542 | 1597 | 1.17E-12 | IPR011011 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 1542 | 1597 | 1.17E-12 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1541 | 1650 | 2.6E-16 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1541 | 1650 | 2.6E-16 | IPR013083 |
| SMART | SM00384 | AT_hook_2 | 936 | 948 | 11.0 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 979 | 991 | 190.0 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 1140 | 1152 | 1.1 | IPR017956 |
| SMART | SM00249 | PHD_3 | 1551 | 1592 | 1.7E-10 | IPR001965 |
| SMART | SM00249 | PHD_3 | 1551 | 1592 | 1.7E-10 | IPR001965 |
| SMART | SM00249 | PHD_3 | 1593 | 1660 | 6.2 | IPR001965 |
| SMART | SM00384 | AT_hook_2 | 936 | 948 | 11.0 | IPR017956 |
| SMART | SM00249 | PHD_3 | 1593 | 1660 | 6.2 | IPR001965 |
| SMART | SM00384 | AT_hook_2 | 979 | 991 | 190.0 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 1140 | 1152 | 1.1 | IPR017956 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 1549 | 1594 | 9.9172 | IPR019787 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 1549 | 1594 | 9.9172 | IPR019787 |
| ProSitePatterns | PS00354 | HMG-I and HMG-Y DNA-binding domain (A+T-hook). | 1138 | 1148 | - | IPR000637 |
| ProSitePatterns | PS00354 | HMG-I and HMG-Y DNA-binding domain (A+T-hook). | 1138 | 1148 | - | IPR000637 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 1552 | 1591 | - | IPR019786 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 1552 | 1591 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1384 | 1417 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 77 | 135 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 19 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1384 | 1408 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1384 | 1417 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 361 | 382 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 19 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2036 | 2058 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 483 | 512 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 478 | 512 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1384 | 1408 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 77 | 135 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 483 | 512 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2036 | 2058 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 478 | 512 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 26 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 26 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 361 | 382 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G05380.1 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein. | 0 |
| RefSeq | XP_010679053.2 | uncharacterized protein LOC104894503 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| F4IXE7 | Increased DNA methylation 1 OS=Arabidopsis thaliana OX=3702 GN=IDM1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9RSQ4 | PHD-type domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_032500 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology