Basic Information
Locus ID:
Lb4G23730
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Short Name:
ABCC5
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr04 | 90587286 | 90591498 | - | Lb4G23730 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.22 | 69,228.54 Da | 53.88 | 99.09 | 0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 304 | 560 | 4.69153E-78 | IPR044726 |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 304 | 560 | 4.69153E-78 | IPR044726 |
| Pfam | PF00664 | ABC transporter transmembrane region | 331 | 462 | 5.0E-19 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 331 | 462 | 5.0E-19 | IPR011527 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 327 | 568 | 3.27E-38 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 327 | 568 | 3.27E-38 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 86 | 202 | 4.1E-13 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 86 | 202 | 4.1E-13 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 1 | 61 | 1.3E-5 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 149 | 222 | 3.9E-11 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 301 | 566 | 1.9E-41 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 84 | 148 | 4.1E-11 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 1 | 61 | 1.3E-5 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 301 | 566 | 1.9E-41 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 149 | 222 | 3.9E-11 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 84 | 148 | 4.1E-11 | IPR027417 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 327 | 538 | 23.324474 | IPR011527 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 327 | 538 | 23.324474 | IPR011527 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 260 | 279 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 254 | 283 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 260 | 279 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 254 | 283 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04120.2 | multidrug resistance-associated protein 5. encodes a high-affinity inositol hexakisphosphate transporter that plays a role in guard cell signaling and phytate storage. It is a member of MRP subfamily / ABC transporter subfamily C. | 0 |
| RefSeq | XP_021763323.1 | ABC transporter C family member 5-like [Chenopodium quinoa] | 0 |
| Q7GB25 | ABC transporter C family member 5 OS=Arabidopsis thaliana OX=3702 GN=ABCC5 PE=2 SV=2 | 0 | |
| TrEMBL | A0A803LAB7 | ABC-type xenobiotic transporter OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology