halophFGD

Basic Information

Locus ID: Lb4G23622

Species & Taxonomic ID: Limonium bicolor & 293754

Genome Assembly: GCA_023374045.1

Description: WD repeat-containing protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr04	85158678	85160337	-	Lb4G23622

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.64	38,852.09 Da	32.50	79.83	-0.35

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00400	WD domain, G-beta repeat	168	199	0.17	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	250	287	0.07	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	168	199	0.17	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	250	287	0.07	IPR001680
SUPERFAMILY	SSF50978	WD40 repeat-like	7	334	1.07E-37	IPR036322
SUPERFAMILY	SSF50978	WD40 repeat-like	7	334	1.07E-37	IPR036322
Gene3D	G3DSA:2.130.10.10	-	9	341	1.5E-44	IPR015943
Gene3D	G3DSA:2.130.10.10	-	9	341	1.5E-44	IPR015943
SMART	SM00320	WD40_4	118	158	0.52	IPR001680
SMART	SM00320	WD40_4	203	243	220.0	IPR001680
SMART	SM00320	WD40_4	65	108	320.0	IPR001680
SMART	SM00320	WD40_4	161	199	0.0042	IPR001680
SMART	SM00320	WD40_4	247	287	3.1E-6	IPR001680
SMART	SM00320	WD40_4	203	243	220.0	IPR001680
SMART	SM00320	WD40_4	161	199	0.0042	IPR001680
SMART	SM00320	WD40_4	247	287	3.1E-6	IPR001680
SMART	SM00320	WD40_4	118	158	0.52	IPR001680
SMART	SM00320	WD40_4	65	108	320.0	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	168	208	8.503359	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	254	288	8.808332	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	254	288	10.475033	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	254	288	10.475033	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	168	208	8.503359	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	254	288	8.808332	-
ProSitePatterns	PS00678	Trp-Asp (WD) repeats signature.	274	288	-	IPR019775
ProSitePatterns	PS00678	Trp-Asp (WD) repeats signature.	274	288	-	IPR019775

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K11805 (DDB1- and CUL4-associated factor 7)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G26640.1	Transducin/WD40 repeat-like superfamily protein.
RefSeq	XP_030927608.1	WD repeat-containing protein LWD1-like [Quercus lobata]
Swiss-Prot	Q38960	WD repeat-containing protein LWD2 OS=Arabidopsis thaliana OX=3702 GN=LWD2 PE=2 SV=1
TrEMBL	A0A7N2R859	WD_REPEATS_REGION domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	5	jg13822, jg13823, jg20791, jg2115, jg22302
Aizoaceae	Mesembryanthemum crystallinum	2	gene_24956, gene_3376
Amaranthaceae	Atriplex hortensis	2	Ah012439, Ah018479
Amaranthaceae	Beta vulgaris	2	BVRB_3g050980, BVRB_6g146360
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg14952, Sbi_jg42473, Sbi_jg45088, Sbi_jg55766
Amaranthaceae	Salicornia europaea	2	Seu_jg26279, Seu_jg27077
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00002228, GOSA_00017860
Amaranthaceae	Suaeda glauca	4	Sgl01201, Sgl06286, Sgl31808, Sgl37092
Amaranthaceae	Chenopodium album	5	gene:ENSEOMG00000000242, gene:ENSEOMG00000001676 ... gene:ENSEOMG00000028152, gene:ENSEOMG00000030845, gene:ENSEOMG00000044471
Amaranthaceae	Chenopodium quinoa	6	CQ.Regalona.r1.3AG0006330, CQ.Regalona.r1.3BG0006390 ... CQ.Regalona.r1.3BG0010500, CQ.Regalona.r1.4BG0010950, CQ.Regalona.r1.6AG0009360, CQ.Regalona.r1.6BG0009920
Apiaceae	Apium graveolens	3	Ag10G02473, Ag3G01783, Ag4G01363
Arecaceae	Cocos nucifera	4	COCNU_02G016230, COCNU_07G008240, COCNU_10G006200 ... COCNU_15G006310
Arecaceae	Phoenix dactylifera	8	gene-LOC103702757, gene-LOC103712797, gene-LOC103712802 ... gene-LOC113461389, gene-LOC120104821, gene-LOC120104822, gene-LOC120107102, gene-LOC120110753
Asparagaceae	Asparagus officinalis	2	AsparagusV1_04.2344.V1.1, AsparagusV1_09.1569.V1.1
Asteraceae	Flaveria trinervia	2	Ftri12G21912, Ftri6G08778
Brassicaceae	Arabidopsis thaliana	3	AT1G12910.1, AT3G26640.1, AT5G24520.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10004515m.g.v1.0, Thhalv10005280m.g.v1.0 ... Thhalv10008091m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp1g11480.v2.2, Sp2g15760.v2.2, Sp2g22830.v2.2
Brassicaceae	Brassica nigra	2	BniB02g007780.2N, BniB02g077350.2N
Casuarinaceae	Casuarina equisetifolia	3	Ceq04G0706, Ceq08G0007, Ceq09G1687
Casuarinaceae	Casuarina glauca	3	Cgl04G0802, Cgl08G0004, Cgl09G1823
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno08g00150, gene.Cymno14g04370
Dunaliellaceae	Dunaliella salina	1	Dusal.0338s00010.v1.0
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate06g02050, gene.Thate08g18480, gene.Thate09g12020
Malvaceae	Hibiscus hamabo Siebold & Zucc.	2	nbisL1-mrna-4217, nbisL1-mrna-5384
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG05.11, evm.TU.LG05.1291
Plantaginaceae	Plantago ovata	2	Pov_00025742, Pov_00038526
Plumbaginaceae	Limonium bicolor	6	Lb0G37631, Lb1G03995, Lb1G04050, Lb4G23622, Lb6G30666 ... Lb7G33830
Poaceae	Echinochloa crus-galli	6	AH01.2975, AH01.2976, AH07.1995, BH07.1959, BH07.2837 ... CH07.1822
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_2AG0132480, gene-QOZ80_2AG0141040 ... gene-QOZ80_2BG0187880, gene-QOZ80_2BG0196650
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.6HG0583670.1.CDS1 ... HORVU.MOREX.r3.6HG0604400.1.CDS1
Poaceae	Lolium multiflorum	2	gene-QYE76_022639, gene-QYE76_024426
Poaceae	Oryza coarctata	4	Oco03G011320, Oco03G018290, Oco04G011710, Oco04G019040
Poaceae	Oryza sativa	2	LOC_Os02g32430.1, LOC_Os02g45810.1
Poaceae	Paspalum vaginatum	2	gene-BS78_04G148100, gene-BS78_04G237800
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0203749, Pt_Chr0203754
Poaceae	Sporobolus alterniflorus	8	Chr03G024160, Chr06G005020, Chr06G010830, Chr09G015500 ... Chr09G023380, Chr13G011400, Chr15G006550, Chr15G012410
Poaceae	Thinopyrum elongatum	2	Tel6E01G408000, Tel6E01G482000
Poaceae	Triticum dicoccoides	4	gene_TRIDC6AG028830, gene_TRIDC6AG039930 ... gene_TRIDC6BG034190, gene_TRIDC6BG046810
Poaceae	Triticum aestivum	4	TraesCS6A02G193300.1.cds1, TraesCS6A02G259400.1.cds1 ... TraesCS6B02G221400.3.cds1, TraesCS6B02G286700.1.cds1
Poaceae	Zea mays	2	Zm00001eb242340_P001, Zm00001eb250740_P001
Poaceae	Zoysia japonica	6	nbis-gene-18923, nbis-gene-18924, nbis-gene-20190 ... nbis-gene-20865, nbis-gene-22247, nbis-gene-9140
Poaceae	Zoysia macrostachya	3	Zma_g13597, Zma_g14137, Zma_g16888
Portulacaceae	Portulaca oleracea	3	evm.TU.LG02.1393, evm.TU.LG09.569, evm.TU.LG16.1666
Posidoniaceae	Posidonia oceanica	4	gene.Posoc01g26230, gene.Posoc01g36550, gene.Posoc05g00260 ... gene.Posoc06g12100
Rhizophoraceae	Bruguiera sexangula	4	evm.TU.Scaffold_11_RagTag.267, evm.TU.Scaffold_1_RagTag.1388 ... evm.TU.Scaffold_2_RagTag.1617, evm.TU.Scaffold_4_RagTag.871
Rhizophoraceae	Carallia pectinifolia	4	nbisL1-mrna-14155, nbisL1-mrna-27468, nbisL1-mrna-3613 ... nbisL1-mrna-6211
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-2121, nbisL1-mrna-4470, nbisL1-mrna-7436
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-1522, nbisL1-mrna-19004, nbisL1-mrna-4065
Rhizophoraceae	Kandelia candel	4	add.evm.TU.utg000005l.92, add.evm.TU.utg000008l.212 ... add.evm.TU.utg000009l.112, add.evm.TU.utg000016l.177
Rhizophoraceae	Kandelia obovata	2	Maker00004814, Maker00016317
Rhizophoraceae	Rhizophora apiculata	4	nbisL1-mrna-16922, nbisL1-mrna-17821, nbisL1-mrna-19805 ... nbisL1-mrna-22531
Rhizophoraceae	Rhizophora mangle	4	nbisL1-mrna-13562, nbisL1-mrna-18950, nbisL1-mrna-19349 ... nbisL1-mrna-21795
Salicaceae	Populus euphratica	7	populus_peu12473, populus_peu25893, populus_peu27139 ... populus_peu27925, populus_peu29354, populus_peu31148, populus_peu31165
Solanaceae	Lycium barbarum	3	gene-LOC132628211, gene-LOC132632187, gene-LOC132632188
Solanaceae	Solanum chilense	4	SOLCI004760800, SOLCI005217100, SOLCI005217200 ... SOLCI007523700
Solanaceae	Solanum pennellii	3	gene-LOC107012197, gene-LOC107012387, gene-LOC107015534
Tamaricaceae	Reaumuria soongarica	2	gene_3076, gene_5035
Tamaricaceae	Tamarix chinensis	2	TC01G2453, TC06G2727
Zosteraceae	Zostera marina	6	Zosma02g00280.v3.1, Zosma03g21590.v3.1, Zosma04g11670.v3.1 ... Zosma25g00020.v3.1, Zosma805g00010.v3.1, Zosma94g00030.v3.1