Basic Information
Locus ID:
Lb4G23616
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
RING finger and CHY zinc finger domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr04 | 84857469 | 84862172 | + | Lb4G23616 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.40 | 31,540.69 Da | 45.55 | 57.80 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14599 | Zinc-ribbon | 204 | 260 | 6.4E-24 | IPR039512 |
| Pfam | PF13639 | Ring finger domain | 154 | 198 | 1.4E-8 | IPR001841 |
| Pfam | PF05495 | CHY zinc finger | 21 | 101 | 2.0E-19 | IPR008913 |
| Pfam | PF13639 | Ring finger domain | 154 | 198 | 1.4E-8 | IPR001841 |
| Pfam | PF14599 | Zinc-ribbon | 204 | 260 | 6.4E-24 | IPR039512 |
| Pfam | PF05495 | CHY zinc finger | 21 | 101 | 2.0E-19 | IPR008913 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 18 | 90 | 1.27E-17 | IPR037274 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 92 | 149 | 1.01E-19 | IPR037275 |
| SUPERFAMILY | SSF57850 | RING/U-box | 155 | 204 | 3.08E-11 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 155 | 204 | 3.08E-11 | - |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 92 | 149 | 1.01E-19 | IPR037275 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 18 | 90 | 1.27E-17 | IPR037274 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 143 | 227 | 8.6E-11 | IPR013083 |
| Gene3D | G3DSA:2.20.28.10 | - | 228 | 270 | 4.5E-17 | - |
| Gene3D | G3DSA:2.20.28.10 | - | 228 | 270 | 4.5E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 143 | 227 | 8.6E-11 | IPR013083 |
| SMART | SM00184 | ring_2 | 156 | 198 | 5.8E-7 | IPR001841 |
| SMART | SM00184 | ring_2 | 156 | 198 | 5.8E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 156 | 199 | 11.559839 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 156 | 199 | 11.559839 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 91 | 155 | 31.597136 | IPR017921 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 14 | 89 | 25.303831 | IPR008913 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 91 | 155 | 31.597136 | IPR017921 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 14 | 89 | 25.303831 | IPR008913 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62970.1 | zinc finger (C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_021851771.1 | E3 ubiquitin-protein ligase MIEL1-like [Spinacia oleracea] | 0 |
| Q8VZK0 | E3 ubiquitin-protein ligase MIEL1 OS=Arabidopsis thaliana OX=3702 GN=MIEL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9RX36 | RING finger and CHY zinc finger domain-containing protein 1 OS=Spinacia oleracea OX=3562 GN=SOVF_019950 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology