Basic Information
Locus ID:
Lb4G23471
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr04 | 79224234 | 79228397 | + | Lb4G23471 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.11 | 26,321.55 Da | 57.77 | 75.29 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 33 | 80 | 1.63E-9 | IPR011009 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 33 | 80 | 1.63E-9 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 13 | 147 | 1.5E-9 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 13 | 147 | 1.5E-9 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 119 | 139 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 122 | 139 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 122 | 139 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 119 | 139 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G20860.1 | NIMA-related kinase 5. Encodes a member of the NIMA-related serine/threonine kinases (Neks) that have been linked to cell-cycle regulation in fungi and mammals. Plant Neks might be involved in plant development processes. | 0 |
| RefSeq | XP_050226819.1 | serine/threonine-protein kinase Nek6-like [Mercurialis annua] | 0 |
| Q9LT35 | Serine/threonine-protein kinase Nek6 OS=Arabidopsis thaliana OX=3702 GN=NEK6 PE=3 SV=1 | 0 | |
| TrEMBL | A0A2K2C0V9 | Protein kinase domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_001G205000 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 1 | Ah029568 |
| Amaranthaceae | Suaeda glauca | 1 | Sgl79019 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb2G11862, Lb4G23471 |
| Poaceae | Oryza sativa | 1 | LOC_Os09g32560.1 |