Basic Information
Locus ID:
Lb4G23394
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Short Name:
SPP2
Description:
sucrose-phosphatase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr04 | 75401401 | 75416722 | - | Lb4G23394 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.87 | 103,816.20 Da | 41.10 | 86.98 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01650 | RT_nLTR_like | 125 | 367 | 2.6055E-34 | - |
| CDD | cd02605 | HAD_SPP | 531 | 780 | 9.30471E-91 | - |
| CDD | cd01650 | RT_nLTR_like | 125 | 367 | 2.6055E-34 | - |
| CDD | cd02605 | HAD_SPP | 531 | 780 | 9.30471E-91 | - |
| Pfam | PF00078 | Reverse transcriptase (RNA-dependent DNA polymerase) | 143 | 349 | 6.5E-32 | IPR000477 |
| Pfam | PF08472 | Sucrose-6-phosphate phosphohydrolase C-terminal | 783 | 915 | 6.0E-53 | IPR013679 |
| Pfam | PF05116 | Sucrose-6F-phosphate phosphohydrolase | 529 | 782 | 7.5E-97 | IPR006380 |
| Pfam | PF00078 | Reverse transcriptase (RNA-dependent DNA polymerase) | 143 | 349 | 6.5E-32 | IPR000477 |
| Pfam | PF05116 | Sucrose-6F-phosphate phosphohydrolase | 529 | 782 | 7.5E-97 | IPR006380 |
| Pfam | PF08472 | Sucrose-6-phosphate phosphohydrolase C-terminal | 783 | 915 | 6.0E-53 | IPR013679 |
| SUPERFAMILY | SSF54427 | NTF2-like | 804 | 915 | 1.31E-18 | IPR032710 |
| SUPERFAMILY | SSF56784 | HAD-like | 530 | 751 | 9.86E-30 | IPR036412 |
| SUPERFAMILY | SSF54427 | NTF2-like | 804 | 915 | 1.31E-18 | IPR032710 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 63 | 337 | 2.11E-12 | IPR043502 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 63 | 337 | 2.11E-12 | IPR043502 |
| SUPERFAMILY | SSF56784 | HAD-like | 530 | 751 | 9.86E-30 | IPR036412 |
| Gene3D | G3DSA:3.40.50.1000 | - | 531 | 777 | 6.5E-79 | IPR023214 |
| Gene3D | G3DSA:3.90.1070.10 | - | 622 | 693 | 6.5E-79 | - |
| Gene3D | G3DSA:3.10.450.50 | - | 804 | 920 | 2.7E-14 | - |
| Gene3D | G3DSA:3.40.50.1000 | - | 531 | 777 | 6.5E-79 | IPR023214 |
| Gene3D | G3DSA:3.90.1070.10 | - | 622 | 693 | 6.5E-79 | - |
| Gene3D | G3DSA:3.10.450.50 | - | 804 | 920 | 2.7E-14 | - |
| TIGRFAM | TIGR01485 | SPP_plant-cyano: sucrose phosphatase | 529 | 783 | 2.8E-115 | IPR012847 |
| TIGRFAM | TIGR01484 | HAD-SF-IIB: HAD hydrolase, family IIB | 531 | 740 | 3.3E-38 | IPR006379 |
| TIGRFAM | TIGR01482 | SPP-subfamily: sucrose-phosphate phosphatase subfamily | 532 | 778 | 3.2E-71 | - |
| TIGRFAM | TIGR01482 | SPP-subfamily: sucrose-phosphate phosphatase subfamily | 532 | 778 | 3.2E-71 | - |
| TIGRFAM | TIGR01484 | HAD-SF-IIB: HAD hydrolase, family IIB | 531 | 740 | 3.3E-38 | IPR006379 |
| TIGRFAM | TIGR01485 | SPP_plant-cyano: sucrose phosphatase | 529 | 783 | 2.8E-115 | IPR012847 |
| ProSiteProfiles | PS50878 | Reverse transcriptase (RT) catalytic domain profile. | 112 | 367 | 10.946016 | IPR000477 |
| ProSiteProfiles | PS50878 | Reverse transcriptase (RT) catalytic domain profile. | 112 | 367 | 10.946016 | IPR000477 |
| SFLD | SFLDS00003 | Haloacid Dehalogenase | 521 | 783 | 0.0 | - |
| SFLD | SFLDF00043 | sucrose-phosphatase | 521 | 783 | 0.0 | - |
| SFLD | SFLDF00043 | sucrose-phosphatase | 521 | 783 | 0.0 | - |
| SFLD | SFLDS00003 | Haloacid Dehalogenase | 521 | 783 | 0.0 | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G35840.1 | Sucrose-6F-phosphate phosphohydrolase family protein. | 0 |
| RefSeq | XP_010268155.1 | PREDICTED: sucrose-phosphatase 2-like [Nelumbo nucifera] | 0 |
| Q5IH14 | Sucrose-phosphatase 1 OS=Nicotiana tabacum OX=4097 GN=SPP1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7C8ZBL9 | Sucrose-phosphatase OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg15170, jg31894, jg3683 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_11368, gene_2328 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah003047, Ah006581 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g109020 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg15809, Sbi_jg36273, Sbi_jg56608 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg13808, Seu_jg4334 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00027527, GOSA_00028173 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl25353, Sgl30528, Sgl51357, Sgl56605 |
| Amaranthaceae | Chenopodium album | 5 | gene:ENSEOMG00000005562, gene:ENSEOMG00000010287 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.4AG0013220, CQ.Regalona.r1.4BG0015550 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30169090, pistato.v30277000 |
| Apiaceae | Apium graveolens | 3 | Ag2G01604, Ag3G00687, Ag6G01908 |
| Arecaceae | Cocos nucifera | 2 | COCNU_03G000090, COCNU_12G001670 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103707401, gene-LOC103719698 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_01.2610.V1.1, AsparagusV1_08.3108.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri12G03520, Ftri17G20005 |
| Brassicaceae | Arabidopsis thaliana | 4 | AT1G51420.1, AT2G35840.1, AT3G52340.1, AT3G54270.1 |
| Brassicaceae | Eutrema salsugineum | 5 | Thhalv10010361m.g.v1.0, Thhalv10010402m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 4 | Sp1g38100.v2.2, Sp4g18100.v2.2, Sp5g08120.v2.2 ... |
| Brassicaceae | Brassica nigra | 10 | BniB01g008610.2N, BniB01g008650.2N, BniB03g063780.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq04G1247, Ceq08G1608 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl04G1409, Cgl08G1638 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno01g11890, gene.Cymno06g03370 |
| Dunaliellaceae | Dunaliella salina | 3 | Dusal.0161s00006.v1.0, Dusal.0406s00015.v1.0 ... |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g24910 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-12622 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG01.1860, evm.TU.LG02.1390 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00003640 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb4G23394, Lb6G31526 |
| Poaceae | Echinochloa crus-galli | 12 | AH02.1823, AH03.1536, AH05.768, AH05.769, AH07.3397 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_1AG0017250, gene-QOZ80_1BG0066280 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.1HG0020190.1, HORVU.MOREX.r3.5HG0420010.1 |
| Poaceae | Lolium multiflorum | 4 | gene-QYE76_009471, gene-QYE76_042854, gene-QYE76_061283 ... |
| Poaceae | Oryza coarctata | 5 | Oco02G010930, Oco03G002330, Oco04G002230, Oco09G002160 ... |
| Poaceae | Oryza sativa | 3 | LOC_Os01g27880.1, LOC_Os02g05030.1, LOC_Os05g05270.1 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_02G385000, gene-BS78_09G041400 ... |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0303724 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr01G012540, Chr02G018730, Chr05G014950, Chr05G014980 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel1E01G173800, Tel5E01G007400 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC1AG012620, gene_TRIDC1BG015480 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS1A02G088600.1, TraesCS1B02G107600.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb351280_P003, Zm00001eb417940_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-36695, nbis-gene-52842 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g25019, Zma_g26413 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG06.1371, evm.TU.LG11.716, evm.TU.LG18.488 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g21870 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_1_RagTag.1085, evm.TU.Scaffold_2_RagTag.1084 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-4104, nbisL1-mrna-6523 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-14682 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-10184 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000009l.597, evm.TU.utg000016l.859 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00005178, Maker00016446 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-11043, nbisL1-mrna-12506, nbisL1-mrna-12507 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-13293, nbisL1-mrna-5673, nbisL1-mrna-5674 |
| Salicaceae | Populus euphratica | 3 | populus_peu06028, populus_peu12379, populus_peu26000 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132607251, gene-LOC132625962 |
| Solanaceae | Solanum chilense | 2 | SOLCI000200100, SOLCI000938400 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107002529, gene-LOC107009907 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_1812 |
| Tamaricaceae | Tamarix chinensis | 1 | TC04G2787 |
| Zosteraceae | Zostera marina | 1 | Zosma06g11450.v3.1 |