Basic Information
Locus ID:
Lb4G23247
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr04 | 68093118 | 68095275 | - | Lb4G23247 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.29 | 30,076.90 Da | 18.40 | 90.41 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 26 | 261 | 5.8433E-53 | - |
| CDD | cd00200 | WD40 | 26 | 261 | 5.8433E-53 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 185 | 222 | 7.7E-10 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 141 | 180 | 3.7E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 53 | 91 | 3.7E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 141 | 180 | 3.7E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 53 | 91 | 3.7E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 98 | 135 | 7.2E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 185 | 222 | 7.7E-10 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 98 | 135 | 7.2E-6 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 25 | 259 | 2.17E-61 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 25 | 259 | 2.17E-61 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 15 | 266 | 1.4E-82 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 15 | 266 | 1.4E-82 | IPR015943 |
| SMART | SM00320 | WD40_4 | 139 | 180 | 1.4E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 95 | 135 | 1.1E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 226 | 267 | 52.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 183 | 222 | 1.1E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 11 | 46 | 470.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 50 | 91 | 1.3E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 183 | 222 | 1.1E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 139 | 180 | 1.4E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 50 | 91 | 1.3E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 11 | 46 | 470.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 95 | 135 | 1.1E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 226 | 267 | 52.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 102 | 144 | 15.153581 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 146 | 183 | 9.572873 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 190 | 222 | 15.454345 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 146 | 183 | 9.572873 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 102 | 144 | 15.153581 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 146 | 189 | 12.914561 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 57 | 93 | 9.414692 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 190 | 222 | 12.736494 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 57 | 93 | 11.243651 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 57 | 93 | 11.243651 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 190 | 222 | 12.736494 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 102 | 135 | 11.787407 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 102 | 135 | 11.787407 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 146 | 189 | 12.914561 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 57 | 93 | 9.414692 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 190 | 222 | 15.454345 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 167 | 181 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 78 | 92 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 167 | 181 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 78 | 92 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 167 | 181 | 1.2E-9 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 78 | 92 | 1.2E-9 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 209 | 223 | 1.2E-9 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 209 | 223 | 1.2E-9 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 167 | 181 | 1.2E-9 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 78 | 92 | 1.2E-9 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G79990.2 | structural molecules. | 0 |
| RefSeq | XP_021886878.1 | coatomer subunit beta'-2 [Carica papaya] | 0 |
| Q9CAA0 | Coatomer subunit beta'-1 OS=Arabidopsis thaliana OX=3702 GN=At1g79990 PE=2 SV=2 | 0 | |
| TrEMBL | A0A5B6WDY8 | Coatomer subunit beta'-2-like OS=Gossypium australe OX=47621 GN=copb2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology