halophFGD

Basic Information

Locus ID: Lb4G23246

Species & Taxonomic ID: Limonium bicolor & 293754

Genome Assembly: GCA_023374045.1

Description: to Saccharomyces cerevisiae MET30 (YIL046W)

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr04	68071033	68080085	-	Lb4G23246

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.94	39,614.43 Da	28.00	84.01	-0.31

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd00200	WD40	94	353	3.33E-47	-
CDD	cd00200	WD40	94	353	3.33E-47	-
Pfam	PF00400	WD domain, G-beta repeat	277	314	1.8E-9	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	233	272	3.3E-7	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	233	272	3.3E-7	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	179	227	1.5E-5	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	179	227	1.5E-5	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	277	314	1.8E-9	IPR001680
SUPERFAMILY	SSF50978	WD40 repeat-like	101	351	5.33E-56	IPR036322
SUPERFAMILY	SSF50978	WD40 repeat-like	101	351	5.33E-56	IPR036322
Gene3D	G3DSA:2.130.10.10	-	97	358	1.4E-74	IPR015943
Gene3D	G3DSA:2.130.10.10	-	97	358	1.4E-74	IPR015943
SMART	SM00320	WD40_4	176	227	5.2E-9	IPR001680
SMART	SM00320	WD40_4	318	359	58.0	IPR001680
SMART	SM00320	WD40_4	176	227	5.2E-9	IPR001680
SMART	SM00320	WD40_4	318	359	58.0	IPR001680
SMART	SM00320	WD40_4	133	172	0.91	IPR001680
SMART	SM00320	WD40_4	133	172	0.91	IPR001680
SMART	SM00320	WD40_4	275	314	3.2E-11	IPR001680
SMART	SM00320	WD40_4	91	130	11.0	IPR001680
SMART	SM00320	WD40_4	275	314	3.2E-11	IPR001680
SMART	SM00320	WD40_4	91	130	11.0	IPR001680
SMART	SM00320	WD40_4	231	272	6.4E-7	IPR001680
SMART	SM00320	WD40_4	231	272	6.4E-7	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	204	236	10.374778	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	282	314	12.604675	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	238	281	12.914561	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	282	323	15.688272	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	238	275	9.572873	-
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	282	314	12.604675	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	204	236	10.374778	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	238	281	12.914561	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	238	275	9.572873	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	282	323	15.688272	IPR001680
ProSitePatterns	PS00678	Trp-Asp (WD) repeats signature.	259	273	-	IPR019775
ProSitePatterns	PS00678	Trp-Asp (WD) repeats signature.	259	273	-	IPR019775
PRINTS	PR00320	G protein beta WD-40 repeat signature	214	228	4.5E-9	IPR020472
PRINTS	PR00320	G protein beta WD-40 repeat signature	259	273	4.5E-9	IPR020472
PRINTS	PR00320	G protein beta WD-40 repeat signature	259	273	4.5E-9	IPR020472
PRINTS	PR00320	G protein beta WD-40 repeat signature	301	315	4.5E-9	IPR020472
PRINTS	PR00320	G protein beta WD-40 repeat signature	301	315	4.5E-9	IPR020472
PRINTS	PR00320	G protein beta WD-40 repeat signature	214	228	4.5E-9	IPR020472

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G79990.2	structural molecules.
RefSeq	XP_006465562.2	coatomer subunit beta'-3-like isoform X1 [Citrus sinensis]
Swiss-Prot	Q9CAA0	Coatomer subunit beta'-1 OS=Arabidopsis thaliana OX=3702 GN=At1g79990 PE=2 SV=2
TrEMBL	A0A103Y1Z7	G-protein beta WD-40 repeat-containing protein OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_020708 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	3	jg13528, jg25369, jg27197
Aizoaceae	Mesembryanthemum crystallinum	2	gene_26151, gene_26152
Amaranthaceae	Atriplex hortensis	3	Ah010724, Ah011445, Ah011446
Amaranthaceae	Beta vulgaris	1	BVRB_9g220570
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg11437, Sbi_jg46395
Amaranthaceae	Salicornia europaea	1	Seu_jg20716
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00005264, GOSA_00009274
Amaranthaceae	Suaeda glauca	5	Sgl43451, Sgl55890, Sgl61080, Sgl62060, Sgl66622
Amaranthaceae	Chenopodium album	4	gene:ENSEOMG00000016355, gene:ENSEOMG00000019314 ... gene:ENSEOMG00000039774, gene:ENSEOMG00000051718
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.7BG0010840, CQ.Regalona.r1.9AG0010770 ... CQ.Regalona.r1.9AG0013780, CQ.Regalona.r1.9BG0011620
Anacardiaceae	Pistacia vera	2	pistato.v30125810, pistato.v30125840
Apiaceae	Apium graveolens	5	Ag2G00566, Ag2G01700, Ag4G01326, Ag5G00835, Ag6G01454
Arecaceae	Cocos nucifera	2	COCNU_02G000460, COCNU_06G000870
Arecaceae	Phoenix dactylifera	3	gene-LOC103697512, gene-LOC103704604, gene-LOC103721627
Asparagaceae	Asparagus officinalis	2	AsparagusV1_01.2026.V1.1, AsparagusV1_03.2987.V1.1
Asteraceae	Flaveria trinervia	5	Ftri18G17233, Ftri1G02389, Ftri8G19123, Ftri9G15219 ... FtriNA10366
Brassicaceae	Arabidopsis thaliana	3	AT1G52360.2, AT1G79990.1, AT3G15980.5
Brassicaceae	Eutrema salsugineum	2	Thhalv10011217m.g.v1.0, Thhalv10020009m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp1g38970.v2.2, Sp3g14330.v2.2, Sp5g35770.v2.2
Brassicaceae	Brassica nigra	6	BniB04g057410.2N, BniB06g028370.2N, BniB06g051770.2N ... BniB07g003500.2N, BniB07g028600.2N, BniB07g053830.2N
Casuarinaceae	Casuarina equisetifolia	7	Ceq05G0228, Ceq05G0229, Ceq05G0230, Ceq05G0231, Ceq05G0232 ... Ceq05G0233, Ceq05G0239
Casuarinaceae	Casuarina glauca	3	Cgl05G0237, Cgl05G0241, Cgl05G0244
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno02g11780, gene.Cymno16g00580
Dunaliellaceae	Dunaliella salina	2	Dusal.0118s00002.v1.0, Dusal.0838s00004.v1.0
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate02g33060, gene.Thate06g15470
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-4534
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG01.375
Plantaginaceae	Plantago ovata	2	Pov_00015427, Pov_00024990
Plumbaginaceae	Limonium bicolor	5	Lb0G37653, Lb3G18460, Lb4G23246, Lb4G23247, Lb4G24604
Poaceae	Echinochloa crus-galli	9	AH06.205, AH06.2172, AH07.805, BH06.307, BH07.4009, BH07.930 ... CH06.2199, CH06.292, CH07.687
Poaceae	Eleusine coracana subsp. coracana	8	gene-QOZ80_2AG0105840, gene-QOZ80_2BG0159250 ... gene-QOZ80_4AG0326750, gene-QOZ80_6AG0508440, gene-QOZ80_6BG0460640, gene-QOZ80_6BG0497370, gene-QOZ80_9BG0700790, gene-QOZ80_9BG0714850
Poaceae	Hordeum vulgare	5	HORVU.MOREX.r3.3HG0218550.1, HORVU.MOREX.r3.3HG0218560.1 ... HORVU.MOREX.r3.5HG0439780.1, HORVU.MOREX.r3.6HG0576880.1, HORVU.MOREX.r3.7HG0648880.1
Poaceae	Lolium multiflorum	11	gene-QYE76_007481, gene-QYE76_007485, gene-QYE76_007486 ... gene-QYE76_007489, gene-QYE76_021529, gene-QYE76_027804, gene-QYE76_030605, gene-QYE76_030709, gene-QYE76_036868, gene-QYE76_036875, gene-QYE76_036883
Poaceae	Oryza coarctata	5	Oco03G005560, Oco04G005610, Oco11G002140, Oco11G012010 ... Oco12G002070
Poaceae	Oryza sativa	3	LOC_Os02g11830.2, LOC_Os02g11840.1, LOC_Os06g05180.3
Poaceae	Paspalum vaginatum	3	gene-BS78_04G082100, gene-BS78_10G035400 ... gene-BS78_10G179100
Poaceae	Puccinellia tenuiflora	9	Pt_Chr0202040, Pt_Chr0401756, Pt_Chr0401777, Pt_Chr0401778 ... Pt_Chr0401790, Pt_Chr0401796, Pt_Chr0401800, Pt_Chr0402244, Pt_Chr0501230
Poaceae	Sporobolus alterniflorus	9	Chr06G032770, Chr0G015150, Chr10G017290, Chr11G005220 ... Chr11G023120, Chr14G001600, Chr15G024130, Chr18G011980, Chr21G000720
Poaceae	Thinopyrum elongatum	8	Tel3E01G021500, Tel3E01G153000, Tel4E01G144800 ... Tel6E01G349900, Tel7E01G1011300, Tel7E01G1011500, Tel7E01G1011600, Tel7E01G187700
Poaceae	Triticum dicoccoides	20	gene_TRIDC3BG000710, gene_TRIDC3BG001890 ... gene_TRIDC3BG070490, gene_TRIDC4AG058530, gene_TRIDC4AG067370, gene_TRIDC4AG067390, gene_TRIDC4AG068050, gene_TRIDC4BG014360, gene_TRIDC5AG008480, gene_TRIDC6AG025470-100890, gene_TRIDC6AG025470-62404, gene_TRIDC6BG031740, gene_TRIDC7AG010080, gene_TRIDC7AG075100, gene_TRIDC7AG075270, gene_TRIDC7AG075460, gene_TRIDC7BG072010, gene_TRIDC7BG074000, gene_TRIDC7BG075480, gene_TRIDC7BG076690
Poaceae	Triticum aestivum	18	TraesCS1D02G434700.1, TraesCS3A02G012700.1 ... TraesCS3B02G005000.1, TraesCS3B02G015000.1, TraesCS4A02G388200.2, TraesCS4B02G092000.1, TraesCS4D02G089000.1, TraesCS5D02G502400.1, TraesCS6A02G130600.1, TraesCS6A02G179300.1, TraesCS6B02G206500.2, TraesCS6D02G165800.1, TraesCS7A02G088600.3, TraesCS7A02G541100.1, TraesCS7B02G480400.1, TraesCS7D02G083900.1, TraesCS7D02G554800.1, TraesCSU02G189400.1
Poaceae	Zea mays	10	Zm00001eb195340_P001, Zm00001eb195370_P001 ... Zm00001eb195680_P001, Zm00001eb205430_P001, Zm00001eb240380_P004, Zm00001eb265360_P001, Zm00001eb270540_P002, Zm00001eb377270_P002, Zm00001eb386030_P003, Zm00001eb424470_P001
Poaceae	Zoysia japonica	4	nbis-gene-33409, nbis-gene-34693, nbis-gene-40386 ... nbis-gene-44018
Poaceae	Zoysia macrostachya	3	Zma_g12430, Zma_g15178, Zma_g29091
Portulacaceae	Portulaca oleracea	5	evm.TU.LG06.1186, evm.TU.LG07.1711, evm.TU.LG11.541 ... evm.TU.LG15.1499, evm.TU.LG22.1135
Posidoniaceae	Posidonia oceanica	3	gene.Posoc03g24360, gene.Posoc08g15220, gene.Posoc09g11420
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.60453.1, evm.TU.60454.1 ... evm.TU.Scaffold_10_RagTag.1257
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-1215, nbisL1-mrna-27857, nbisL1-mrna-6978
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-10365, nbisL1-mrna-10715, nbisL1-mrna-5732
Rhizophoraceae	Ceriops zippeliana	4	nbisL1-mrna-6425, nbisL1-mrna-6428, nbisL1-mrna-7905 ... nbisL1-mrna-8861
Rhizophoraceae	Kandelia candel	3	evm.TU.utg000019l.762, evm.TU.utg000023l.163 ... evm.TU.utg000033l.581
Rhizophoraceae	Kandelia obovata	2	Maker00014791, Maker00018792
Rhizophoraceae	Rhizophora apiculata	4	nbisL1-mrna-16380, nbisL1-mrna-18820, nbisL1-mrna-5230 ... nbisL1-mrna-7325
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-13166, nbisL1-mrna-18017, nbisL1-mrna-21262
Salicaceae	Populus euphratica	6	populus_peu02776, populus_peu12858, populus_peu12859 ... populus_peu33693, populus_peu33724, populus_peu33725
Solanaceae	Lycium barbarum	4	gene-LOC132598458, gene-LOC132603673, gene-LOC132633342 ... gene-LOC132634354
Solanaceae	Solanum chilense	4	SOLCI001215900, SOLCI001859400, SOLCI001859500 ... SOLCI005754900
Solanaceae	Solanum pennellii	4	gene-LOC107007027, gene-LOC107014066, gene-LOC107014070 ... gene-LOC107023332
Tamaricaceae	Reaumuria soongarica	2	STRG.21280_chr09_+, gene_10084
Tamaricaceae	Tamarix chinensis	3	TC05G0223, TC08G2071, TC10G1957
Zosteraceae	Zostera marina	9	Zosma04g03500.v3.1, Zosma05g02990.v3.1, Zosma06g08730.v3.1 ... Zosma06g30830.v3.1, Zosma435g00010.v3.1, Zosma555g00010.v3.1, Zosma555g00020.v3.1, Zosma644g00010.v3.1, Zosma869g00010.v3.1