halophFGD

Basic Information

Locus ID: Lb4G23234

Species & Taxonomic ID: Limonium bicolor & 293754

Genome Assembly: GCA_023374045.1

Description: Belongs to the RecA family

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr04	67539494	67545473	-	Lb4G23234

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
7.51	51,887.98 Da	37.71	87.79	-0.12

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd00983	recA	124	447	0.0	IPR013765
CDD	cd00983	recA	124	447	0.0	IPR013765
Pfam	PF00154	recA bacterial DNA recombination protein	127	392	5.3E-116	IPR013765
Pfam	PF00154	recA bacterial DNA recombination protein	127	392	5.3E-116	IPR013765
SUPERFAMILY	SSF52540	P-loop containing nucleoside triphosphate hydrolases	125	391	2.92E-54	IPR027417
SUPERFAMILY	SSF54752	RecA protein, C-terminal domain	392	449	2.22E-17	IPR023400
SUPERFAMILY	SSF52540	P-loop containing nucleoside triphosphate hydrolases	125	391	2.92E-54	IPR027417
SUPERFAMILY	SSF54752	RecA protein, C-terminal domain	392	449	2.22E-17	IPR023400
Gene3D	G3DSA:3.40.50.300	-	147	391	1.7E-78	IPR027417
Gene3D	G3DSA:3.30.250.10	-	394	450	2.4E-20	-
Gene3D	G3DSA:3.30.250.10	-	394	450	2.4E-20	-
Gene3D	G3DSA:3.40.50.300	-	147	391	1.7E-78	IPR027417
SMART	SM00382	AAA_5	176	347	4.5E-11	IPR003593
SMART	SM00382	AAA_5	176	347	4.5E-11	IPR003593
TIGRFAM	TIGR02012	tigrfam_recA: protein RecA	124	447	2.3E-142	IPR013765
TIGRFAM	TIGR02012	tigrfam_recA: protein RecA	124	447	2.3E-142	IPR013765
ProSiteProfiles	PS50162	RecA family profile 1.	155	313	28.611645	IPR020588
ProSiteProfiles	PS50163	RecA family profile 2.	318	396	27.27853	IPR020587
ProSiteProfiles	PS50162	RecA family profile 1.	155	313	28.611645	IPR020588
ProSiteProfiles	PS50163	RecA family profile 2.	318	396	27.27853	IPR020587
ProSitePatterns	PS00321	recA signature.	332	340	-	IPR020584
ProSitePatterns	PS00321	recA signature.	332	340	-	IPR020584
PRINTS	PR00142	RecA protein signature	284	313	1.1E-76	IPR013765
PRINTS	PR00142	RecA protein signature	212	241	1.1E-76	IPR013765
PRINTS	PR00142	RecA protein signature	367	396	1.1E-76	IPR013765
PRINTS	PR00142	RecA protein signature	329	357	1.1E-76	IPR013765
PRINTS	PR00142	RecA protein signature	421	438	1.1E-76	IPR013765
PRINTS	PR00142	RecA protein signature	246	275	1.1E-76	IPR013765
PRINTS	PR00142	RecA protein signature	246	275	1.1E-76	IPR013765
PRINTS	PR00142	RecA protein signature	421	438	1.1E-76	IPR013765
PRINTS	PR00142	RecA protein signature	329	357	1.1E-76	IPR013765
PRINTS	PR00142	RecA protein signature	367	396	1.1E-76	IPR013765
PRINTS	PR00142	RecA protein signature	284	313	1.1E-76	IPR013765
PRINTS	PR00142	RecA protein signature	212	241	1.1E-76	IPR013765
Hamap	MF_00268	Protein RecA [recA].	125	453	44.822132	IPR013765
Hamap	MF_00268	Protein RecA [recA].	125	453	44.822132	IPR013765
MobiDBLite	mobidb-lite	consensus disorder prediction	455	479	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	455	479	-	-

Gene Ontology

Biological Process:

GO:0006259 (DNA metabolic process) GO:0006281 (DNA repair)

Molecular Function:

GO:0003677 (DNA binding) GO:0003697 (single-stranded DNA binding) GO:0005524 (ATP binding) GO:0008094 (ATP-dependent activity, acting on DNA)

KEGG Pathway

KO Term:

K03553 (recombination protein RecA)

Pathway:

ko03440 (Homologous recombination) map03440 (Homologous recombination)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G79050.1	recA DNA recombination family protein.
RefSeq	XP_021866721.1	DNA repair protein recA homolog 1, chloroplastic [Spinacia oleracea]
Swiss-Prot	Q39199	DNA repair protein recA homolog 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RECA PE=2 SV=1
TrEMBL	A0A0K9QWQ2	DNA repair protein recA homolog 1, chloroplastic OS=Spinacia oleracea OX=3562 GN=SOVF_132640 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	5	jg15413, jg20582, jg32367, jg32916, jg4300
Aizoaceae	Mesembryanthemum crystallinum	3	gene_11024, gene_4617, gene_7669
Amaranthaceae	Atriplex hortensis	3	Ah007405, Ah015172, Ah022007
Amaranthaceae	Beta vulgaris	1	BVRB_3g062120
Amaranthaceae	Salicornia bigelovii	6	Sbi_jg18396, Sbi_jg18962, Sbi_jg36798, Sbi_jg37416 ... Sbi_jg59417, Sbi_jg63229
Amaranthaceae	Salicornia europaea	3	Seu_jg23662, Seu_jg4718, Seu_jg5257
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00014743, GOSA_00020746, GOSA_00024178
Amaranthaceae	Suaeda glauca	7	Sgl02796, Sgl07923, Sgl22464, Sgl27680, Sgl41785, Sgl41786 ... Sgl46587
Amaranthaceae	Chenopodium album	8	gene:ENSEOMG00000009222, gene:ENSEOMG00000012094 ... gene:ENSEOMG00000026919, gene:ENSEOMG00000030614, gene:ENSEOMG00000031839, gene:ENSEOMG00000043365, gene:ENSEOMG00000044628, gene:ENSEOMG00000046222
Amaranthaceae	Chenopodium quinoa	5	CQ.Regalona.r1.3AG0021890, CQ.Regalona.r1.4AG0015950 ... CQ.Regalona.r1.4BG0014080, CQ.Regalona.r1.8AG0014760, CQ.Regalona.r1.8BG0015980
Anacardiaceae	Pistacia vera	3	pistato.v30164210, pistato.v30185770, pistato.v30259480
Apiaceae	Apium graveolens	4	Ag10G01443, Ag10G02923, Ag2G01505, Ag5G01569
Arecaceae	Cocos nucifera	3	COCNU_04G008610, COCNU_09G001050, COCNU_14G009260
Arecaceae	Phoenix dactylifera	3	gene-LOC103696257, gene-LOC103714685, gene-LOC103723937
Asparagaceae	Asparagus officinalis	3	AsparagusV1_04.1944.V1.1, AsparagusV1_05.87.V1.1 ... AsparagusV1_07.3483.V1.1
Asteraceae	Flaveria trinervia	4	Ftri10G25414, Ftri15G00504, Ftri15G06633, Ftri3G03501
Brassicaceae	Arabidopsis thaliana	4	AT1G79050.1, AT2G19490.1, AT3G10140.1, AT3G32920.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10018594m.g.v1.0, Thhalv10020901m.g.v1.0 ... Thhalv10022701m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp3g08420.v2.2, Sp3g32870.v2.2, Sp5g34100.v2.2
Brassicaceae	Brassica nigra	5	BniB02g015630.2N, BniB03g023610.2N, BniB03g068780.2N ... BniB05g074790.2N, BniB06g050620.2N
Casuarinaceae	Casuarina equisetifolia	3	Ceq01G1598, Ceq04G1001, Ceq06G0847
Casuarinaceae	Casuarina glauca	3	Cgl01G1764, Cgl04G1132, Cgl06G0872
Cymodoceaceae	Cymodocea nodosa	3	gene.Cymno04g04220, gene.Cymno11g11360, gene.Cymno14g10860
Dunaliellaceae	Dunaliella salina	1	Dusal.0151s00014.v1.0
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate02g01200, gene.Thate05g03390, gene.Thate09g10070
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-9314
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG01.2520, evm.TU.LG05.1046, evm.TU.LG07.1249
Plantaginaceae	Plantago ovata	3	Pov_00006763, Pov_00038048, Pov_00039633
Plumbaginaceae	Limonium bicolor	4	Lb2G11606, Lb3G16114, Lb4G23234, Lb4G24730
Poaceae	Echinochloa crus-galli	11	AH01.1240, AH02.4208, AH02.4481, BH01.1486, BH02.4233 ... BH02.4533, BH04.1089, CH02.4259, CH02.4584, CH04.1271, CH06.2641
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_1AG0043280, gene-QOZ80_1BG0093200 ... gene-QOZ80_3AG0224540, gene-QOZ80_3BG0269660
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.3HG0305240.1, HORVU.MOREX.r3.3HG0319320.1 ... HORVU.MOREX.r3.5HG0508640.1
Poaceae	Lolium multiflorum	3	gene-QYE76_057130, gene-QYE76_057959, gene-QYE76_063512
Poaceae	Oryza coarctata	6	Oco01G027500, Oco02G028580, Oco02G030920, Oco05G018750 ... Oco06G019540, Oco22G005490
Poaceae	Oryza sativa	4	LOC_Os01g67510.1, LOC_Os01g71690.2, LOC_Os03g43850.1 ... LOC_Os11g19720.1
Poaceae	Paspalum vaginatum	3	gene-BS78_01G145900, gene-BS78_03G370100, gene-BS78_K141300
Poaceae	Puccinellia tenuiflora	4	Pt_Chr0104476, Pt_Chr0207353, Pt_Chr0600272, Pt_Chr0600304
Poaceae	Sporobolus alterniflorus	10	Chr01G009510, Chr02G001220, Chr03G022070, Chr05G031050 ... Chr05G033430, Chr07G023590, Chr08G020000, Chr0G024230, Chr0G031560, Chr12G027490
Poaceae	Thinopyrum elongatum	4	Tel3E01G625800, Tel3E01G777600, Tel5E01G598600 ... Tel6E01G748200
Poaceae	Triticum dicoccoides	6	gene_TRIDC3AG056180, gene_TRIDC3AG068210 ... gene_TRIDC3BG062860, gene_TRIDC3BG077200, gene_TRIDC5AG055060, gene_TRIDC5BG059060
Poaceae	Triticum aestivum	9	TraesCS3A02G394500.1, TraesCS3A02G484100.1 ... TraesCS3B02G426500.1, TraesCS3B02G530900.1, TraesCS3D02G388300.1, TraesCS3D02G479500.1, TraesCS5A02G376100.1, TraesCS5B02G379700.1, TraesCS5D02G386100.1
Poaceae	Zea mays	4	Zm00001eb050740_P001, Zm00001eb141480_P006 ... Zm00001eb144420_P002, Zm00001eb365600_P001
Poaceae	Zoysia japonica	3	nbis-gene-11092, nbis-gene-20435, nbis-gene-28182
Poaceae	Zoysia macrostachya	4	Zma_g11925, Zma_g18707, Zma_g3207, Zma_g9202
Portulacaceae	Portulaca oleracea	6	evm.TU.LG01.2194, evm.TU.LG07.434, evm.TU.LG08.1605 ... evm.TU.LG14.1348, evm.TU.LG15.509, evm.TU.LG22.503
Posidoniaceae	Posidonia oceanica	3	gene.Posoc01g07770, gene.Posoc07g10120, gene.Posoc08g07150
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_10_RagTag.525, evm.TU.Scaffold_2_RagTag.1193 ... evm.TU.Scaffold_5_RagTag.103
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-10504, nbisL1-mrna-12996, nbisL1-mrna-3844
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-12771, nbisL1-mrna-17267, nbisL1-mrna-5363
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-10671, nbisL1-mrna-16913, nbisL1-mrna-18798
Rhizophoraceae	Kandelia candel	3	evm.TU.utg000006l.61, evm.TU.utg000009l.511 ... evm.TU.utg000033l.364
Rhizophoraceae	Kandelia obovata	3	Maker00005186, Maker00013790, Maker00014801
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-12413, nbisL1-mrna-4018, nbisL1-mrna-9280
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-5529, nbisL1-mrna-6917, nbisL1-mrna-8182
Salicaceae	Populus euphratica	5	populus_peu00265, populus_peu05057, populus_peu05064 ... populus_peu11925, populus_peu26079
Solanaceae	Lycium barbarum	4	gene-LOC132607484, gene-LOC132617321, gene-LOC132624595 ... gene-LOC132640056
Solanaceae	Solanum chilense	3	SOLCI000424700, SOLCI004293900, SOLCI006871600
Solanaceae	Solanum pennellii	3	gene-LOC107002771, gene-LOC107018851, gene-LOC107025835
Tamaricaceae	Reaumuria soongarica	3	STRG.18129_chr09_-, gene_5108, gene_6052
Tamaricaceae	Tamarix chinensis	3	TC02G3676, TC06G2513, TC12G1159
Zosteraceae	Zostera marina	4	Zosma03g15350.v3.1, Zosma03g34760.v3.1, Zosma06g02240.v3.1 ... Zosma256g00080.v3.1