Basic Information
Locus ID:
Lb4G23140
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr04 | 62786308 | 62811389 | - | Lb4G23140 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.47 | 105,040.14 Da | 44.18 | 82.36 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02674 | Peptidase_C19R | 757 | 912 | 1.61031E-56 | - |
| CDD | cd02674 | Peptidase_C19R | 757 | 912 | 1.61031E-56 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 323 | 911 | 7.6E-86 | IPR001394 |
| Pfam | PF06337 | DUSP domain | 47 | 147 | 4.9E-22 | IPR006615 |
| Pfam | PF06337 | DUSP domain | 47 | 147 | 4.9E-22 | IPR006615 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 323 | 911 | 7.6E-86 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 320 | 914 | 6.67E-110 | IPR038765 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 320 | 914 | 6.67E-110 | IPR038765 |
| SUPERFAMILY | SSF143791 | DUSP-like | 21 | 147 | 1.7E-27 | IPR035927 |
| SUPERFAMILY | SSF143791 | DUSP-like | 21 | 147 | 1.7E-27 | IPR035927 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 734 | 918 | 1.6E-55 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 160 | 242 | 5.3E-8 | - |
| Gene3D | G3DSA:3.30.2230.10 | - | 17 | 159 | 2.4E-35 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 312 | 516 | 1.2E-68 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 160 | 242 | 5.3E-8 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 312 | 516 | 1.2E-68 | - |
| Gene3D | G3DSA:3.30.2230.10 | - | 17 | 159 | 2.4E-35 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 734 | 918 | 1.6E-55 | - |
| SMART | SM00695 | dusp | 42 | 149 | 2.0E-30 | IPR006615 |
| SMART | SM00695 | dusp | 42 | 149 | 2.0E-30 | IPR006615 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 322 | 914 | 58.485706 | IPR028889 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 322 | 914 | 58.485706 | IPR028889 |
| ProSiteProfiles | PS51283 | DUSP domain profile. | 23 | 146 | 18.575031 | IPR006615 |
| ProSiteProfiles | PS51283 | DUSP domain profile. | 23 | 146 | 18.575031 | IPR006615 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 856 | 873 | - | IPR018200 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 856 | 873 | - | IPR018200 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 323 | 338 | - | IPR018200 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 323 | 338 | - | IPR018200 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G10570.1 | ubiquitin-specific protease 9. encodes a ubiquitin-specific protease family member, UBP9. | 0 |
| RefSeq | XP_034673030.1 | ubiquitin carboxyl-terminal hydrolase 9-like isoform X1 [Vitis riparia] | 0 |
| Q9ZSB5 | Ubiquitin carboxyl-terminal hydrolase 10 OS=Arabidopsis thaliana OX=3702 GN=UBP10 PE=2 SV=2 | 0 | |
| TrEMBL | A0A7C8YSW4 | Ubiquitin carboxyl-terminal hydrolase OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology