Basic Information
Locus ID:
Lb4G23122
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr04 | 61756997 | 61761575 | - | Lb4G23122 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.48 | 57,222.74 Da | 52.57 | 79.46 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 268 | 316 | 5.87634E-16 | - |
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 268 | 316 | 5.87634E-16 | - |
| Pfam | PF12906 | RING-variant domain | 268 | 315 | 6.4E-12 | IPR011016 |
| Pfam | PF12906 | RING-variant domain | 268 | 315 | 6.4E-12 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 264 | 319 | 2.3E-13 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 264 | 319 | 2.3E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 254 | 325 | 1.1E-16 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 254 | 325 | 1.1E-16 | IPR013083 |
| SMART | SM00744 | ringv_2 | 267 | 316 | 1.0E-20 | IPR011016 |
| SMART | SM00744 | ringv_2 | 267 | 316 | 1.0E-20 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 260 | 322 | 19.958511 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 260 | 322 | 19.958511 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 244 | 258 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 71 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 244 | 258 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 23 | 71 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 71 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 229 | 258 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 229 | 258 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 23 | 71 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60580.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_010684110.2 | uncharacterized protein LOC104898704 isoform X2 [Beta vulgaris subsp. vulgaris] | 0 |
| TrEMBL | A0A7C8ZSE4 | RING-CH-type domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology