Basic Information
Locus ID:
Lb4G23091
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr04 | 57880633 | 57885368 | + | Lb4G23091 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.56 | 65,238.70 Da | 51.16 | 83.94 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 348 | 465 | 7.97517E-44 | - |
| CDD | cd00201 | WW | 17 | 46 | 1.73407E-4 | IPR001202 |
| CDD | cd00201 | WW | 17 | 46 | 1.73407E-4 | IPR001202 |
| CDD | cd18787 | SF2_C_DEAD | 348 | 465 | 7.97517E-44 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 360 | 427 | 1.0E-9 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 199 | 323 | 1.1E-35 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 360 | 427 | 1.0E-9 | IPR001650 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 432 | 456 | 9.4E-6 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 199 | 323 | 1.1E-35 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 432 | 456 | 9.4E-6 | IPR001650 |
| SUPERFAMILY | SSF51045 | WW domain | 7 | 49 | 2.05E-8 | IPR036020 |
| SUPERFAMILY | SSF51045 | WW domain | 7 | 49 | 2.05E-8 | IPR036020 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 201 | 472 | 3.57E-62 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 201 | 472 | 3.57E-62 | IPR027417 |
| Gene3D | G3DSA:2.20.70.10 | - | 6 | 53 | 6.7E-6 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 179 | 337 | 8.8E-57 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 430 | 497 | 6.8E-20 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 338 | 428 | 7.8E-19 | IPR027417 |
| Gene3D | G3DSA:2.20.70.10 | - | 6 | 53 | 6.7E-6 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 430 | 497 | 6.8E-20 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 338 | 428 | 7.8E-19 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 179 | 337 | 8.8E-57 | IPR027417 |
| SMART | SM00490 | helicmild6 | 384 | 456 | 4.6E-11 | IPR001650 |
| SMART | SM00456 | ww_5 | 15 | 48 | 2.2E-6 | IPR001202 |
| SMART | SM00487 | ultradead3 | 154 | 351 | 2.6E-39 | IPR014001 |
| SMART | SM00490 | helicmild6 | 384 | 456 | 4.6E-11 | IPR001650 |
| SMART | SM00487 | ultradead3 | 154 | 351 | 2.6E-39 | IPR014001 |
| SMART | SM00456 | ww_5 | 15 | 48 | 2.2E-6 | IPR001202 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 363 | 495 | 12.754639 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 185 | 334 | 25.391359 | IPR014001 |
| ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 14 | 48 | 11.743 | IPR001202 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 185 | 334 | 25.391359 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 363 | 495 | 12.754639 | IPR001650 |
| ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 14 | 48 | 11.743 | IPR001202 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 280 | 288 | - | IPR000629 |
| ProSitePatterns | PS01159 | WW/rsp5/WWP domain signature. | 20 | 46 | - | IPR001202 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 280 | 288 | - | IPR000629 |
| ProSitePatterns | PS01159 | WW/rsp5/WWP domain signature. | 20 | 46 | - | IPR001202 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G01540.1 | DEAD box RNA helicase 1. RNA HELICASE DRH1 | 0 |
| RefSeq | XP_008230577.1 | PREDICTED: DEAD-box ATP-dependent RNA helicase 46 [Prunus mume] | 0 |
| P46942 | ATP-dependent RNA helicase-like protein DB10 OS=Nicotiana sylvestris OX=4096 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6J5UFI7 | DEAD-box ATP-dependent RNA helicase 46 OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS24038 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology