halophFGD

Basic Information

Locus ID: Lb4G23087

Species & Taxonomic ID: Limonium bicolor & 293754

Genome Assembly: GCA_023374045.1

Description: PWWP domain

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr04	57724588	57728922	-	Lb4G23087

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.55	105,362.86 Da	44.25	60.14	-0.79

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd05162	PWWP	81	169	2.85945E-27	-
CDD	cd05162	PWWP	81	169	2.85945E-27	-
Pfam	PF00855	PWWP domain	81	169	5.3E-19	IPR000313
Pfam	PF00855	PWWP domain	81	169	5.3E-19	IPR000313
SUPERFAMILY	SSF63748	Tudor/PWWP/MBT	78	186	1.02E-26	-
SUPERFAMILY	SSF63748	Tudor/PWWP/MBT	78	186	1.02E-26	-
Gene3D	G3DSA:2.30.30.140	-	73	178	2.1E-27	-
Gene3D	G3DSA:2.30.30.140	-	73	178	2.1E-27	-
SMART	SM00293	PWWP_4	81	144	4.4E-11	IPR000313
SMART	SM00293	PWWP_4	81	144	4.4E-11	IPR000313
ProSiteProfiles	PS50812	PWWP domain profile.	83	146	15.626537	IPR000313
ProSiteProfiles	PS50812	PWWP domain profile.	83	146	15.626537	IPR000313
MobiDBLite	mobidb-lite	consensus disorder prediction	408	424	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	336	481	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	643	679	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	901	922	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	426	453	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	342	356	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1	32	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	295	319	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	635	790	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	367	381	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	504	526	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	504	552	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	686	720	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	721	764	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1	32	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	408	424	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	336	481	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	635	790	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	504	552	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	721	764	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	295	319	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	686	720	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	367	381	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	643	679	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	765	780	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	504	526	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	342	356	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	426	453	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	901	922	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	765	780	-	-
Coils	Coil	Coil	361	381	-	-
Coils	Coil	Coil	361	381	-	-

Best hit

Source	Best Hit ID	Description
TAIR	AT5G40340.2	-
RefSeq	XP_050271213.1	PWWP domain-containing protein 6 [Quercus robur]
Swiss-Prot	Q9FNE4	PWWP domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=PDP3 PE=1 SV=1
TrEMBL	A0A2P2JFT2	Uncharacterized protein LOC8289805 isoform X1 OS=Rhizophora mucronata OX=61149 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	6	jg14608, jg17788, jg19843, jg2728, jg2729, jg32064
Aizoaceae	Mesembryanthemum crystallinum	2	gene_12995, gene_19993
Amaranthaceae	Atriplex hortensis	2	Ah003579, Ah004231
Amaranthaceae	Beta vulgaris	2	BVRB_3g061970, BVRB_5g101890
Amaranthaceae	Salicornia bigelovii	6	Sbi_jg24462, Sbi_jg27579, Sbi_jg32950, Sbi_jg4629 ... Sbi_jg7446, Sbi_jg8309
Amaranthaceae	Salicornia europaea	3	Seu_jg11730, Seu_jg12583, Seu_jg7729
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00001341, GOSA_00001639
Amaranthaceae	Suaeda glauca	6	Sgl51403, Sgl51795, Sgl56646, Sgl57102, Sgl71535, Sgl75114
Amaranthaceae	Chenopodium album	12	gene:ENSEOMG00000004091, gene:ENSEOMG00000006001 ... gene:ENSEOMG00000008119, gene:ENSEOMG00000013997, gene:ENSEOMG00000020527, gene:ENSEOMG00000022556, gene:ENSEOMG00000024316, gene:ENSEOMG00000025094, gene:ENSEOMG00000030148, gene:ENSEOMG00000038156, gene:ENSEOMG00000040232, gene:ENSEOMG00000043637
Amaranthaceae	Chenopodium quinoa	8	CQ.Regalona.r1.3AG0021750, CQ.Regalona.r1.3BG0022560 ... CQ.Regalona.r1.5AG0002800, CQ.Regalona.r1.5AG0009120, CQ.Regalona.r1.5BG0002920, CQ.Regalona.r1.5BG0009470, CQ.Regalona.r1.7AG0017040, CQ.Regalona.r1.7BG0019300
Anacardiaceae	Pistacia vera	3	pistato.v30022490, pistato.v30171590, pistato.v30271950
Apiaceae	Apium graveolens	4	Ag11G04585, Ag11G04586, Ag3G02696, AgUnG01654
Arecaceae	Cocos nucifera	7	COCNU_02G007470, COCNU_04G002910, COCNU_04G014480 ... COCNU_05G010260, COCNU_12G006970, COCNU_16G006880, COCNU_16G006970
Arecaceae	Phoenix dactylifera	6	gene-LOC103702061, gene-LOC103706650, gene-LOC103708880 ... gene-LOC103711526, gene-LOC103718133, gene-LOC120103883
Asparagaceae	Asparagus officinalis	5	AsparagusV1_03.2110.V1.1, AsparagusV1_03.2111.V1.1 ... AsparagusV1_05.426.V1.1, AsparagusV1_07.364.V1.1, AsparagusV1_08.3440.V1.1
Asteraceae	Flaveria trinervia	8	Ftri16G12507, Ftri16G23879, Ftri17G22103, Ftri17G25899 ... Ftri18G04977, Ftri18G07402, Ftri18G10628, Ftri9G08131
Brassicaceae	Arabidopsis thaliana	5	AT3G09670.1, AT3G27860.1, AT3G54760.1, AT5G02950.1 ... AT5G40340.1
Brassicaceae	Eutrema salsugineum	6	Thhalv10005709m.g.v1.0, Thhalv10010125m.g.v1.0 ... Thhalv10010166m.g.v1.0, Thhalv10015666m.g.v1.0, Thhalv10020687m.g.v1.0, Thhalv10027630m.g.v1.0
Brassicaceae	Schrenkiella parvula	6	Sp2g16900.v2.2, Sp3g08010.v2.2, Sp5g07670.v2.2 ... Sp5g07680.v2.2, Sp5g07690.v2.2, Sp7g01590.v2.2
Brassicaceae	Brassica nigra	6	BniB02g067960.2N, BniB03g023430.2N, BniB05g030910.2N ... BniB06g059790.2N, BniB06g065170.2N, BniB06g065210.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq02G0660, Ceq02G0661
Casuarinaceae	Casuarina glauca	2	Cgl02G0670, Cgl02G1917
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno02g14570, gene.Cymno05g15770
Dunaliellaceae	Dunaliella salina	1	Dusal.2340s00001.v1.0
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate02g17030, gene.Thate08g12720
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-10827
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG01.1382, evm.TU.LG01.2818, evm.TU.LG05.357
Plantaginaceae	Plantago ovata	5	Pov_00005141, Pov_00023294, Pov_00027865, Pov_00036029 ... Pov_00040387
Plumbaginaceae	Limonium bicolor	4	Lb2G14255, Lb2G14256, Lb4G23078, Lb4G23087
Poaceae	Echinochloa crus-galli	7	AH02.4672, AH05.2116, AH05.911, BH02.4740, BH05.2253 ... CH05.1006, CH05.2333
Poaceae	Eleusine coracana subsp. coracana	8	gene-QOZ80_1AG0048420, gene-QOZ80_1BG0098360 ... gene-QOZ80_5AG0370320, gene-QOZ80_5AG0370330, gene-QOZ80_5AG0406880, gene-QOZ80_5BG0417840, gene-QOZ80_5BG0417850, gene-QOZ80_5BG0454980
Poaceae	Hordeum vulgare	6	HORVU.MOREX.r3.1HG0012850.1.CDS1 ... HORVU.MOREX.r3.1HG0012860.1.CDS1, HORVU.MOREX.r3.1HG0012870.1.CDS1, HORVU.MOREX.r3.1HG0072910.2, HORVU.MOREX.r3.1HG0072920.1, HORVU.MOREX.r3.3HG0330960.1.CDS1
Poaceae	Lolium multiflorum	5	gene-QYE76_007990, gene-QYE76_009183, gene-QYE76_009185 ... gene-QYE76_014259, gene-QYE76_058499
Poaceae	Oryza coarctata	7	Oco06G017380, Oco09G011670, Oco09G011680, Oco10G001240 ... Oco10G011640, Oco10G011650, Oco22G005540
Poaceae	Oryza sativa	4	LOC_Os05g03110.1, LOC_Os05g38800.2, LOC_Os05g38810.1 ... LOC_Os11g19810.1
Poaceae	Paspalum vaginatum	3	gene-BS78_03G420900, gene-BS78_09G025000 ... gene-BS78_09G170500
Poaceae	Puccinellia tenuiflora	3	Pt_Chr0500068, Pt_Chr0502302, Pt_Chr0601054
Poaceae	Sporobolus alterniflorus	11	Chr01G013260, Chr01G013270, Chr01G018940, Chr02G000240 ... Chr03G023970, Chr05G034590, Chr08G017450, Chr12G023510, Chr22G006260, Chr22G006270, Chr28G005850
Poaceae	Thinopyrum elongatum	5	Tel1E01G124400, Tel1E01G124500, Tel1E01G467500 ... Tel1E01G467800, Tel3E01G914400
Poaceae	Triticum dicoccoides	6	gene_TRIDC1AG008110, gene_TRIDC1AG043100 ... gene_TRIDC1AG043120, gene_TRIDC1BG010260, gene_TRIDC1BG048900, gene_TRIDC1BG048920
Poaceae	Triticum aestivum	16	TraesCS1A02G059600.1.cds1, TraesCS1A02G059700.1.cds1 ... TraesCS1A02G288200.1, TraesCS1A02G288400.1, TraesCS1B02G077800.1.cds1, TraesCS1B02G077900.1.cds1, TraesCS1B02G297600.1, TraesCS1B02G297800.1, TraesCS1D02G060800.1.cds1, TraesCS1D02G060900.1.cds1, TraesCS1D02G287200.1, TraesCS1D02G287400.1, TraesCS3A02G538200.1, TraesCS3B02G603600.1, TraesCS3B02G603700.1.cds1, TraesCS3D02G543800.1
Poaceae	Zea mays	14	Zm00001eb049500_P001, Zm00001eb061660_P001 ... Zm00001eb083550_P001, Zm00001eb139650_P001, Zm00001eb209400_P001, Zm00001eb264800_P001, Zm00001eb289850_P002, Zm00001eb351570_P002, Zm00001eb355190_P001, Zm00001eb355200_P001, Zm00001eb362080_P001, Zm00001eb371060_P001, Zm00001eb402610_P001, Zm00001eb411240_P002
Poaceae	Zoysia japonica	8	nbis-gene-10728, nbis-gene-14171, nbis-gene-14172 ... nbis-gene-18307, nbis-gene-18308, nbis-gene-24159, nbis-gene-24160, nbis-gene-28043
Poaceae	Zoysia macrostachya	4	Zma_g12029, Zma_g27049, Zma_g27617, Zma_g28397
Portulacaceae	Portulaca oleracea	5	evm.TU.LG01.2784, evm.TU.LG04.1309, evm.TU.LG04.879 ... evm.TU.LG05.1844, evm.TU.LG05.2056
Posidoniaceae	Posidonia oceanica	3	gene.Posoc01g36070, gene.Posoc03g10190, gene.Posoc04g21070
Rhizophoraceae	Bruguiera sexangula	7	evm.TU.Scaffold_10_RagTag.901, evm.TU.Scaffold_10_RagTag.902 ... evm.TU.Scaffold_11_RagTag.478, evm.TU.Scaffold_2_RagTag.844, evm.TU.Scaffold_3_RagTag.1898, evm.TU.Scaffold_6_RagTag.149, evm.TU.Scaffold_6_RagTag.150
Rhizophoraceae	Carallia pectinifolia	6	nbisL1-mrna-14966, nbisL1-mrna-2337, nbisL1-mrna-2600 ... nbisL1-mrna-26086, nbisL1-mrna-26864, nbisL1-mrna-4356
Rhizophoraceae	Ceriops tagal	4	nbisL1-mrna-18785, nbisL1-mrna-479, nbisL1-mrna-6757 ... nbisL1-mrna-8833
Rhizophoraceae	Ceriops zippeliana	8	nbisL1-mrna-124, nbisL1-mrna-125, nbisL1-mrna-14126 ... nbisL1-mrna-14127, nbisL1-mrna-3066, nbisL1-mrna-9153, nbisL1-mrna-9154, nbisL1-mrna-9959
Rhizophoraceae	Kandelia candel	4	add.evm.TU.utg000009l.327, add.evm.TU.utg000019l.27 ... evm.TU.utg000004l.205, evm.TU.utg000005l.79
Rhizophoraceae	Kandelia obovata	4	Maker00002046, Maker00003847, Maker00005191, Maker00009972
Rhizophoraceae	Rhizophora apiculata	6	nbisL1-mrna-21491, nbisL1-mrna-21492, nbisL1-mrna-21543 ... nbisL1-mrna-21858, nbisL1-mrna-3735, nbisL1-mrna-533
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-19473, nbisL1-mrna-5888, nbisL1-mrna-7809
Salicaceae	Populus euphratica	8	populus_peu02333, populus_peu06324, populus_peu11730 ... populus_peu11731, populus_peu11736, populus_peu20157, populus_peu25794, populus_peu25795
Solanaceae	Lycium barbarum	3	gene-LOC132613877, gene-LOC132621098, gene-LOC132630101
Solanaceae	Solanum chilense	3	SOLCI000383800, SOLCI004331100, SOLCI006729000
Solanaceae	Solanum pennellii	3	gene-LOC107011607, gene-LOC107017621, gene-LOC107030688
Tamaricaceae	Reaumuria soongarica	3	MSTRG.1619_chr01_-, STRG.3455_chr02_-, STRG.4596_chr02_+
Tamaricaceae	Tamarix chinensis	3	TC10G0742, TC12G0363, TC12G1491
Zosteraceae	Zostera marina	1	Zosma04g18780.v3.1