Basic Information
Locus ID:
Lb4G23016
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Rhamnogalacturonate lyase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr04 | 55628885 | 55636312 | + | Lb4G23016 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.32 | 70,975.44 Da | 31.10 | 69.19 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10317 | RGL4_C | 425 | 610 | 1.90362E-56 | - |
| CDD | cd10320 | RGL4_N | 10 | 274 | 7.77591E-53 | - |
| CDD | cd10316 | RGL4_M | 314 | 413 | 2.98227E-30 | IPR029413 |
| CDD | cd10316 | RGL4_M | 314 | 413 | 2.98227E-30 | IPR029413 |
| CDD | cd10317 | RGL4_C | 425 | 610 | 1.90362E-56 | - |
| CDD | cd10320 | RGL4_N | 10 | 274 | 7.77591E-53 | - |
| Pfam | PF06045 | Rhamnogalacturonate lyase family | 2 | 183 | 3.1E-68 | IPR010325 |
| Pfam | PF06045 | Rhamnogalacturonate lyase family | 2 | 183 | 3.1E-68 | IPR010325 |
| Pfam | PF14683 | Polysaccharide lyase family 4, domain III | 423 | 609 | 1.4E-55 | IPR029411 |
| Pfam | PF14683 | Polysaccharide lyase family 4, domain III | 423 | 609 | 1.4E-55 | IPR029411 |
| Pfam | PF14686 | Polysaccharide lyase family 4, domain II | 341 | 410 | 1.0E-23 | IPR029413 |
| Pfam | PF14686 | Polysaccharide lyase family 4, domain II | 341 | 410 | 1.0E-23 | IPR029413 |
| SUPERFAMILY | SSF49452 | Starch-binding domain-like | 352 | 411 | 9.81E-10 | IPR013784 |
| SUPERFAMILY | SSF49785 | Galactose-binding domain-like | 420 | 610 | 2.83E-47 | IPR008979 |
| SUPERFAMILY | SSF49452 | Starch-binding domain-like | 352 | 411 | 9.81E-10 | IPR013784 |
| SUPERFAMILY | SSF49785 | Galactose-binding domain-like | 420 | 610 | 2.83E-47 | IPR008979 |
| Gene3D | G3DSA:2.70.98.10 | - | 1 | 285 | 6.6E-7 | IPR014718 |
| Gene3D | G3DSA:2.60.40.1120 | - | 313 | 411 | 3.2E-9 | - |
| Gene3D | G3DSA:2.60.120.260 | - | 421 | 610 | 4.3E-19 | - |
| Gene3D | G3DSA:2.70.98.10 | - | 1 | 285 | 6.6E-7 | IPR014718 |
| Gene3D | G3DSA:2.60.120.260 | - | 421 | 610 | 4.3E-19 | - |
| Gene3D | G3DSA:2.60.40.1120 | - | 313 | 411 | 3.2E-9 | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G09890.1 | Rhamnogalacturonate lyase family protein. | 0 |
| RefSeq | XP_010671398.1 | probable rhamnogalacturonate lyase B [Beta vulgaris subsp. vulgaris] | 0 |
| TrEMBL | A0A803LV70 | Rhamnogalacturonan endolyase OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology