Basic Information
Locus ID:
Lb4G22959
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Belongs to the glycosyl hydrolase 17 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr04 | 53871732 | 53874410 | + | Lb4G22959 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.77 | 57,562.50 Da | 41.02 | 88.01 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00332 | Glycosyl hydrolases family 17 | 48 | 367 | 5.1E-74 | IPR000490 |
| Pfam | PF00332 | Glycosyl hydrolases family 17 | 48 | 367 | 5.1E-74 | IPR000490 |
| Pfam | PF07983 | X8 domain | 385 | 456 | 9.2E-21 | IPR012946 |
| Pfam | PF07983 | X8 domain | 385 | 456 | 9.2E-21 | IPR012946 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 48 | 367 | 1.49E-79 | IPR017853 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 48 | 367 | 1.49E-79 | IPR017853 |
| Gene3D | G3DSA:3.20.20.80 | Glycosidases | 47 | 374 | 4.6E-107 | - |
| Gene3D | G3DSA:1.20.58.1040 | - | 378 | 490 | 4.9E-12 | - |
| Gene3D | G3DSA:3.20.20.80 | Glycosidases | 47 | 374 | 4.6E-107 | - |
| Gene3D | G3DSA:1.20.58.1040 | - | 378 | 490 | 4.9E-12 | - |
| SMART | SM00768 | X8_cls | 384 | 469 | 1.2E-49 | IPR012946 |
| SMART | SM00768 | X8_cls | 384 | 469 | 1.2E-49 | IPR012946 |
| ProSitePatterns | PS00587 | Glycosyl hydrolases family 17 signature. | 282 | 295 | - | IPR000490 |
| ProSitePatterns | PS00587 | Glycosyl hydrolases family 17 signature. | 282 | 295 | - | IPR000490 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 474 | 494 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 474 | 494 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G11820.2 | O-Glycosyl hydrolases family 17 protein. | 0 |
| RefSeq | XP_021853052.1 | glucan endo-1,3-beta-glucosidase 1 [Spinacia oleracea] | 0 |
| O65399 | Glucan endo-1,3-beta-glucosidase 1 OS=Arabidopsis thaliana OX=3702 GN=At1g11820 PE=2 SV=3 | 0 | |
| TrEMBL | A0A0K9QUE2 | X8 domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_140130 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology