Basic Information
Locus ID:
Lb4G22906
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Rhamnogalacturonate lyase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr04 | 52622051 | 52624896 | + | Lb4G22906 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.95 | 67,645.05 Da | 33.83 | 71.05 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10316 | RGL4_M | 320 | 423 | 1.14355E-27 | IPR029413 |
| CDD | cd10320 | RGL4_N | 1 | 285 | 6.01661E-68 | - |
| CDD | cd10316 | RGL4_M | 320 | 423 | 1.14355E-27 | IPR029413 |
| CDD | cd10320 | RGL4_N | 1 | 285 | 6.01661E-68 | - |
| CDD | cd10317 | RGL4_C | 435 | 584 | 2.44152E-32 | - |
| CDD | cd10317 | RGL4_C | 435 | 584 | 2.44152E-32 | - |
| Pfam | PF14683 | Polysaccharide lyase family 4, domain III | 433 | 583 | 1.7E-33 | IPR029411 |
| Pfam | PF14683 | Polysaccharide lyase family 4, domain III | 433 | 583 | 1.7E-33 | IPR029411 |
| Pfam | PF06045 | Rhamnogalacturonate lyase family | 1 | 187 | 2.8E-83 | IPR010325 |
| Pfam | PF14686 | Polysaccharide lyase family 4, domain II | 343 | 411 | 1.0E-19 | IPR029413 |
| Pfam | PF14686 | Polysaccharide lyase family 4, domain II | 343 | 411 | 1.0E-19 | IPR029413 |
| Pfam | PF06045 | Rhamnogalacturonate lyase family | 1 | 187 | 2.8E-83 | IPR010325 |
| SUPERFAMILY | SSF49452 | Starch-binding domain-like | 319 | 402 | 1.88E-8 | IPR013784 |
| SUPERFAMILY | SSF49452 | Starch-binding domain-like | 319 | 402 | 1.88E-8 | IPR013784 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 4 | 277 | 2.64E-7 | IPR011013 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 4 | 277 | 2.64E-7 | IPR011013 |
| SUPERFAMILY | SSF49785 | Galactose-binding domain-like | 432 | 583 | 1.19E-28 | IPR008979 |
| SUPERFAMILY | SSF49785 | Galactose-binding domain-like | 432 | 583 | 1.19E-28 | IPR008979 |
| Gene3D | G3DSA:2.60.120.260 | - | 430 | 584 | 1.4E-11 | - |
| Gene3D | G3DSA:2.60.120.260 | - | 430 | 584 | 1.4E-11 | - |
| Gene3D | G3DSA:2.70.98.10 | - | 1 | 287 | 2.0E-8 | IPR014718 |
| Gene3D | G3DSA:2.60.40.1120 | - | 317 | 411 | 1.1E-6 | - |
| Gene3D | G3DSA:2.70.98.10 | - | 1 | 287 | 2.0E-8 | IPR014718 |
| Gene3D | G3DSA:2.60.40.1120 | - | 317 | 411 | 1.1E-6 | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G09890.1 | Rhamnogalacturonate lyase family protein. | 0 |
| RefSeq | XP_011074281.1 | probable rhamnogalacturonate lyase B isoform X2 [Sesamum indicum] | 0 |
| TrEMBL | A0A6I9SXH8 | rhamnogalacturonan endolyase OS=Sesamum indicum OX=4182 GN=LOC105159045 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology