Basic Information
Locus ID:
Lb4G22905
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Rhamnogalacturonate lyase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr04 | 52616119 | 52619348 | + | Lb4G22905 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.36 | 73,820.13 Da | 38.09 | 75.75 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10316 | RGL4_M | 334 | 414 | 2.42166E-24 | IPR029413 |
| CDD | cd10317 | RGL4_C | 446 | 636 | 4.98013E-49 | - |
| CDD | cd10320 | RGL4_N | 11 | 294 | 1.53444E-62 | - |
| CDD | cd10316 | RGL4_M | 334 | 414 | 2.42166E-24 | IPR029413 |
| CDD | cd10320 | RGL4_N | 11 | 294 | 1.53444E-62 | - |
| CDD | cd10317 | RGL4_C | 446 | 636 | 4.98013E-49 | - |
| Pfam | PF06045 | Rhamnogalacturonate lyase family | 9 | 203 | 9.3E-86 | IPR010325 |
| Pfam | PF14686 | Polysaccharide lyase family 4, domain II | 357 | 426 | 3.0E-21 | IPR029413 |
| Pfam | PF14683 | Polysaccharide lyase family 4, domain III | 444 | 634 | 1.5E-50 | IPR029411 |
| Pfam | PF06045 | Rhamnogalacturonate lyase family | 9 | 203 | 9.3E-86 | IPR010325 |
| Pfam | PF14683 | Polysaccharide lyase family 4, domain III | 444 | 634 | 1.5E-50 | IPR029411 |
| Pfam | PF14686 | Polysaccharide lyase family 4, domain II | 357 | 426 | 3.0E-21 | IPR029413 |
| SUPERFAMILY | SSF49785 | Galactose-binding domain-like | 442 | 636 | 8.08E-42 | IPR008979 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 17 | 294 | 8.79E-6 | IPR011013 |
| SUPERFAMILY | SSF49452 | Starch-binding domain-like | 332 | 422 | 4.12E-8 | IPR013784 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 17 | 294 | 8.79E-6 | IPR011013 |
| SUPERFAMILY | SSF49785 | Galactose-binding domain-like | 442 | 636 | 8.08E-42 | IPR008979 |
| SUPERFAMILY | SSF49452 | Starch-binding domain-like | 332 | 422 | 4.12E-8 | IPR013784 |
| Gene3D | G3DSA:2.60.40.1120 | - | 331 | 430 | 4.4E-8 | - |
| Gene3D | G3DSA:2.60.40.1120 | - | 331 | 430 | 4.4E-8 | - |
| Gene3D | G3DSA:2.60.120.260 | - | 441 | 636 | 2.7E-21 | - |
| Gene3D | G3DSA:2.70.98.10 | - | 6 | 304 | 4.7E-6 | IPR014718 |
| Gene3D | G3DSA:2.70.98.10 | - | 6 | 304 | 4.7E-6 | IPR014718 |
| Gene3D | G3DSA:2.60.120.260 | - | 441 | 636 | 2.7E-21 | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G09890.4 | - | 0 |
| RefSeq | XP_021852504.1 | probable rhamnogalacturonate lyase B isoform X1 [Spinacia oleracea] | 0 |
| TrEMBL | A0A0K9RZ62 | rhamnogalacturonan endolyase OS=Spinacia oleracea OX=3562 GN=SOVF_012950 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology