Basic Information
Locus ID:
Lb4G22819
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Rhamnogalacturonate lyase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr04 | 49411179 | 49415636 | - | Lb4G22819 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.14 | 60,669.50 Da | 30.77 | 73.66 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10316 | RGL4_M | 330 | 429 | 6.00264E-32 | IPR029413 |
| CDD | cd10320 | RGL4_N | 11 | 290 | 3.10106E-78 | - |
| CDD | cd10316 | RGL4_M | 330 | 429 | 6.00264E-32 | IPR029413 |
| CDD | cd10320 | RGL4_N | 11 | 290 | 3.10106E-78 | - |
| Pfam | PF14686 | Polysaccharide lyase family 4, domain II | 353 | 425 | 2.7E-24 | IPR029413 |
| Pfam | PF14683 | Polysaccharide lyase family 4, domain III | 439 | 512 | 2.4E-17 | IPR029411 |
| Pfam | PF06045 | Rhamnogalacturonate lyase family | 9 | 199 | 3.2E-90 | IPR010325 |
| Pfam | PF06045 | Rhamnogalacturonate lyase family | 9 | 199 | 3.2E-90 | IPR010325 |
| Pfam | PF14683 | Polysaccharide lyase family 4, domain III | 439 | 512 | 2.4E-17 | IPR029411 |
| Pfam | PF14686 | Polysaccharide lyase family 4, domain II | 353 | 425 | 2.7E-24 | IPR029413 |
| SUPERFAMILY | SSF49785 | Galactose-binding domain-like | 436 | 512 | 6.46E-14 | IPR008979 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 14 | 289 | 3.77E-9 | IPR011013 |
| SUPERFAMILY | SSF49452 | Starch-binding domain-like | 330 | 425 | 7.65E-9 | IPR013784 |
| SUPERFAMILY | SSF49785 | Galactose-binding domain-like | 436 | 512 | 6.46E-14 | IPR008979 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 14 | 289 | 3.77E-9 | IPR011013 |
| SUPERFAMILY | SSF49452 | Starch-binding domain-like | 330 | 425 | 7.65E-9 | IPR013784 |
| Gene3D | G3DSA:2.60.40.1120 | - | 329 | 426 | 3.1E-6 | - |
| Gene3D | G3DSA:2.70.98.10 | - | 7 | 267 | 2.1E-11 | IPR014718 |
| Gene3D | G3DSA:2.60.40.1120 | - | 329 | 426 | 3.1E-6 | - |
| Gene3D | G3DSA:2.70.98.10 | - | 7 | 267 | 2.1E-11 | IPR014718 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G09890.4 | - | 0 |
| RefSeq | XP_021759798.1 | rhamnogalacturonate lyase B-like [Chenopodium quinoa] | 0 |
| TrEMBL | A0A803LK80 | rhamnogalacturonan endolyase OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology