Basic Information
Locus ID:
Lb4G22729
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
CHY zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr04 | 46138174 | 46141908 | - | Lb4G22729 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.25 | 65,488.09 Da | 47.15 | 78.00 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12108 | Hr-like | 112 | 267 | 2.13492E-29 | - |
| CDD | cd12108 | Hr-like | 112 | 267 | 2.13492E-29 | - |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 108 | 205 | 1.5E-5 | IPR012312 |
| Pfam | PF05495 | CHY zinc finger | 433 | 486 | 4.0E-10 | IPR008913 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 108 | 205 | 1.5E-5 | IPR012312 |
| Pfam | PF05495 | CHY zinc finger | 433 | 486 | 4.0E-10 | IPR008913 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 433 | 467 | 2.75E-5 | IPR037274 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 433 | 467 | 2.75E-5 | IPR037274 |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 104 | 334 | 8.5E-27 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 104 | 334 | 8.5E-27 | - |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 433 | 473 | 12.164286 | IPR008913 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 433 | 473 | 12.164286 | IPR008913 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 35 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 35 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G18290.1 | zinc finger protein-related. Encodes BRUTUS (BTS), a putative E3 ligase protein with metal ion binding and DNA binding domains, which negatively regulates the response to iron deficiency. | 0 |
| RefSeq | XP_021753475.1 | zinc finger protein BRUTUS-like [Chenopodium quinoa] | 0 |
| Q8LPQ5 | Zinc finger protein BRUTUS OS=Arabidopsis thaliana OX=3702 GN=BTS PE=1 SV=1 | 0 | |
| TrEMBL | A0A6A6MYY2 | Hemerythrin domain-containing protein OS=Hevea brasiliensis OX=3981 GN=GH714_041109 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology