Basic Information
Locus ID:
Lb4G22724
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr04 | 45920380 | 45929471 | - | Lb4G22724 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.03 | 140,171.00 Da | 47.38 | 74.12 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16464 | RING-H2_Pirh2 | 1124 | 1167 | 8.95492E-18 | - |
| CDD | cd12108 | Hr-like | 660 | 815 | 3.14112E-28 | - |
| CDD | cd12108 | Hr-like | 312 | 440 | 1.36878E-13 | - |
| CDD | cd12108 | Hr-like | 53 | 179 | 8.18924E-32 | - |
| CDD | cd12108 | Hr-like | 660 | 815 | 3.14112E-28 | - |
| CDD | cd12108 | Hr-like | 53 | 179 | 8.18924E-32 | - |
| CDD | cd12108 | Hr-like | 312 | 440 | 1.36878E-13 | - |
| CDD | cd16464 | RING-H2_Pirh2 | 1124 | 1167 | 8.95492E-18 | - |
| Pfam | PF13639 | Ring finger domain | 1124 | 1166 | 2.9E-7 | IPR001841 |
| Pfam | PF14599 | Zinc-ribbon | 1172 | 1229 | 1.4E-23 | IPR039512 |
| Pfam | PF05495 | CHY zinc finger | 996 | 1071 | 5.2E-19 | IPR008913 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 55 | 181 | 8.3E-12 | IPR012312 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 318 | 442 | 7.9E-6 | IPR012312 |
| Pfam | PF13639 | Ring finger domain | 1124 | 1166 | 2.9E-7 | IPR001841 |
| Pfam | PF14599 | Zinc-ribbon | 1172 | 1229 | 1.4E-23 | IPR039512 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 318 | 442 | 7.9E-6 | IPR012312 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 55 | 181 | 8.3E-12 | IPR012312 |
| Pfam | PF05495 | CHY zinc finger | 996 | 1071 | 5.2E-19 | IPR008913 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 990 | 1052 | 1.57E-16 | IPR037274 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1124 | 1170 | 2.9E-8 | - |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 1062 | 1118 | 1.44E-15 | IPR037275 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 990 | 1052 | 1.57E-16 | IPR037274 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1124 | 1170 | 2.9E-8 | - |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 1062 | 1118 | 1.44E-15 | IPR037275 |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 652 | 881 | 2.1E-26 | - |
| Gene3D | G3DSA:2.20.28.10 | - | 1195 | 1235 | 9.6E-18 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 49 | 199 | 1.5E-32 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 315 | 458 | 1.6E-17 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 652 | 881 | 2.1E-26 | - |
| Gene3D | G3DSA:2.20.28.10 | - | 1195 | 1235 | 9.6E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1118 | 1169 | 1.5E-9 | IPR013083 |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 315 | 458 | 1.6E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1118 | 1169 | 1.5E-9 | IPR013083 |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 49 | 199 | 1.5E-32 | - |
| SMART | SM00184 | ring_2 | 1125 | 1166 | 8.1E-6 | IPR001841 |
| SMART | SM00184 | ring_2 | 1125 | 1166 | 8.1E-6 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 989 | 1058 | 25.395676 | IPR008913 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1125 | 1167 | 11.36805 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 989 | 1058 | 25.395676 | IPR008913 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1125 | 1167 | 11.36805 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 1061 | 1124 | 29.099232 | IPR017921 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 1061 | 1124 | 29.099232 | IPR017921 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 555 | 582 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 555 | 582 | - | - |
| Coils | Coil | Coil | 383 | 403 | - | - |
| Coils | Coil | Coil | 383 | 403 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G18290.1 | zinc finger protein-related. Encodes BRUTUS (BTS), a putative E3 ligase protein with metal ion binding and DNA binding domains, which negatively regulates the response to iron deficiency. | 0 |
| RefSeq | XP_010681649.2 | zinc finger protein BRUTUS isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q8LPQ5 | Zinc finger protein BRUTUS OS=Arabidopsis thaliana OX=3702 GN=BTS PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C8YHY9 | Zinc finger protein BRUTUS OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology