halophFGD

Basic Information

Locus ID: Lb4G22598

Species & Taxonomic ID: Limonium bicolor & 293754

Genome Assembly: GCA_023374045.1

Description: Organic cation carnitine transporter

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr04	41042931	41046794	+	Lb4G22598

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.73	55,437.96 Da	35.91	100.91	0.50

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00083	Sugar (and other) transporter	69	237	2.6E-28	IPR005828
Pfam	PF07690	Major Facilitator Superfamily	356	496	1.7E-12	IPR011701
Pfam	PF00083	Sugar (and other) transporter	69	237	2.6E-28	IPR005828
Pfam	PF07690	Major Facilitator Superfamily	356	496	1.7E-12	IPR011701
SUPERFAMILY	SSF103473	MFS general substrate transporter	22	498	1.09E-67	IPR036259
SUPERFAMILY	SSF103473	MFS general substrate transporter	22	498	1.09E-67	IPR036259
Gene3D	G3DSA:1.20.1250.20	MFS general substrate transporter like domains	30	499	1.2E-86	IPR036259
Gene3D	G3DSA:1.20.1250.20	MFS general substrate transporter like domains	30	499	1.2E-86	IPR036259
ProSiteProfiles	PS50850	Major facilitator superfamily (MFS) profile.	37	492	34.814938	IPR020846
ProSiteProfiles	PS50850	Major facilitator superfamily (MFS) profile.	37	492	34.814938	IPR020846
ProSitePatterns	PS00216	Sugar transport proteins signature 1.	368	383	-	IPR005829
ProSitePatterns	PS00216	Sugar transport proteins signature 1.	368	383	-	IPR005829

Gene Ontology

Biological Process:

GO:0055085 (transmembrane transport)

Molecular Function:

GO:0022857 (transmembrane transporter activity)

Cellular Component:

GO:0016020 (membrane)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G13050.1	Major facilitator superfamily protein.
RefSeq	XP_034696778.1	organic cation/carnitine transporter 7 [Vitis riparia]
Swiss-Prot	Q940M4	Organic cation/carnitine transporter 7 OS=Arabidopsis thaliana OX=3702 GN=OCT7 PE=2 SV=1
TrEMBL	D7SRT9	MFS domain-containing protein OS=Vitis vinifera OX=29760 GN=VIT_09s0054g01610 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	5	jg15290, jg17940, jg3762, jg3763, jg3764
Aizoaceae	Mesembryanthemum crystallinum	5	gene_6600, gene_6601, gene_6602, gene_6603, gene_7682
Amaranthaceae	Atriplex hortensis	5	Ah007662, Ah007663, Ah007667, Ah007678, Ah028569
Amaranthaceae	Beta vulgaris	4	BVRB_4g085370, BVRB_4g085390, BVRB_4g085410, BVRB_6g139640
Amaranthaceae	Salicornia bigelovii	8	Sbi_jg19117, Sbi_jg19119, Sbi_jg19120, Sbi_jg26764 ... Sbi_jg33796, Sbi_jg37539, Sbi_jg37540, Sbi_jg37541
Amaranthaceae	Salicornia europaea	4	Seu_jg5381, Seu_jg5382, Seu_jg5383, Seu_jg8490
Amaranthaceae	Suaeda aralocaspica	7	GOSA_00004036, GOSA_00011723, GOSA_00012374, GOSA_00012375 ... GOSA_00019904, GOSA_00019905, GOSA_00022776
Amaranthaceae	Suaeda glauca	12	Sgl20521, Sgl21477, Sgl21556, Sgl21563, Sgl22543, Sgl22611 ... Sgl25896, Sgl26878, Sgl26881, Sgl27725, Sgl73629, Sgl77092
Amaranthaceae	Chenopodium album	9	gene:ENSEOMG00000008059, gene:ENSEOMG00000009625 ... gene:ENSEOMG00000010524, gene:ENSEOMG00000027856, gene:ENSEOMG00000028879, gene:ENSEOMG00000039100, gene:ENSEOMG00000039213, gene:ENSEOMG00000041058, gene:ENSEOMG00000043125
Amaranthaceae	Chenopodium quinoa	8	CQ.Regalona.r1.4AG0017680, CQ.Regalona.r1.4AG0017700 ... CQ.Regalona.r1.4AG0017720, CQ.Regalona.r1.4BG0018080, CQ.Regalona.r1.4BG0018120, CQ.Regalona.r1.4BG0018160, CQ.Regalona.r1.6AG0010370, CQ.Regalona.r1.7AG0008030
Anacardiaceae	Pistacia vera	7	pistato.v30060590, pistato.v30060620, pistato.v30262020 ... pistato.v30262040, pistato.v30262050, pistato.v30262550, pistato.v30262560
Apiaceae	Apium graveolens	3	Ag10G02395, Ag1G01113, Ag2G02222
Arecaceae	Cocos nucifera	2	COCNU_11G009960, scaffold015412G000010
Arecaceae	Phoenix dactylifera	3	gene-LOC103699607, gene-LOC103712261, gene-LOC113462818
Asparagaceae	Asparagus officinalis	2	AsparagusV1_01.3565.V1.1, AsparagusV1_05.3582.V1.1
Asteraceae	Flaveria trinervia	4	Ftri11G08393, Ftri15G26046, Ftri4G15211, Ftri7G05972
Brassicaceae	Arabidopsis thaliana	1	AT3G13050.1
Brassicaceae	Eutrema salsugineum	1	Thhalv10020555m.g.v1.0
Brassicaceae	Schrenkiella parvula	1	Sp3g11200.v2.2
Brassicaceae	Brassica nigra	2	BniB07g026710.2N, BniB07g055860.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq02G1023
Casuarinaceae	Casuarina glauca	1	Cgl02G1072
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno06g05750
Dunaliellaceae	Dunaliella salina	1	Dusal.0984s00001.v1.0
Hydrocharitaceae	Thalassia testudinum	6	gene.Thate06g05170, gene.Thate06g05180, gene.Thate06g05190 ... gene.Thate06g05200, gene.Thate06g05210, gene.Thate06g05230
Malvaceae	Hibiscus hamabo Siebold & Zucc.	4	nbisL1-mrna-3743, nbisL1-mrna-8158, nbisL1-mrna-8704 ... nbisL1-mrna-8705
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG07.625, evm.TU.LG07.626, evm.TU.LG09.1007
Plantaginaceae	Plantago ovata	11	Pov_00003931, Pov_00003935, Pov_00003936, Pov_00003937 ... Pov_00003938, Pov_00003939, Pov_00019448, Pov_00019868, Pov_00032830, Pov_00039516, Pov_00039517
Plumbaginaceae	Limonium bicolor	1	Lb4G22598
Poaceae	Echinochloa crus-galli	17	AH01.1225, AH01.1226, AH01.1972, AH01.2264, AH03.2915 ... BH01.1497, BH01.2272, BH01.2633, BH03.3086, BH03.3623, CH01.2367, CH01.2801, CH03.3279, CH03.3824, CH03.3825, CH06.2622, CH06.2623
Poaceae	Eleusine coracana subsp. coracana	11	gene-QOZ80_2AG0122790, gene-QOZ80_2AG0125740 ... gene-QOZ80_2BG0178120, gene-QOZ80_2BG0181460, gene-QOZ80_3AG0224730, gene-QOZ80_3AG0224750, gene-QOZ80_3BG0269980, gene-QOZ80_6AG0526200, gene-QOZ80_6BG0480100, gene-QOZ80_7BG0604810, gene-QOZ80_7BG0604820
Poaceae	Hordeum vulgare	5	HORVU.MOREX.r3.2HG0132930.3, HORVU.MOREX.r3.2HG0191960.1 ... HORVU.MOREX.r3.5HG0505710.1, HORVU.MOREX.r3.5HG0508840.1, HORVU.MOREX.r3.5HG0508860.2
Poaceae	Lolium multiflorum	6	gene-QYE76_014138, gene-QYE76_040538, gene-QYE76_046229 ... gene-QYE76_063497, gene-QYE76_063498, gene-QYE76_063500
Poaceae	Oryza coarctata	7	Oco05G018680, Oco06G019460, Oco07G015550, Oco08G015000 ... Oco14G011240, Oco17G011780, Oco18G011660
Poaceae	Oryza sativa	4	LOC_Os03g43720.3, LOC_Os04g51970.2, LOC_Os07g38400.1 ... LOC_Os09g38690.1
Poaceae	Paspalum vaginatum	7	gene-BS78_01G146800, gene-BS78_01G146900, gene-BS78_K281500 ... gene-BS78_01G223900, gene-BS78_01G238100, gene-BS78_02G271500, gene-BS78_02G321600
Poaceae	Puccinellia tenuiflora	5	Pt_Chr0104461, Pt_Chr0304496, Pt_Chr0304574, Pt_Chr0700164 ... Pt_Chr0700352
Poaceae	Sporobolus alterniflorus	11	Chr01G009670, Chr07G023490, Chr09G009970, Chr10G006270 ... Chr11G013200, Chr12G027350, Chr13G015160, Chr13G015170, Chr15G016850, Chr24G010670, Chr28G009890
Poaceae	Thinopyrum elongatum	4	Tel2E01G728000, Tel5E01G579600, Tel5E01G600100 ... Tel5E01G600200
Poaceae	Triticum dicoccoides	10	gene_TRIDC2AG025380, gene_TRIDC2AG061680 ... gene_TRIDC2BG029820, gene_TRIDC2BG065550, gene_TRIDC5AG053090, gene_TRIDC5AG055170, gene_TRIDC5AG055180, gene_TRIDC5BG057180, gene_TRIDC5BG059180, gene_TRIDC5BG059190
Poaceae	Triticum aestivum	16	TraesCS2A02G197300.1, TraesCS2A02G428400.1 ... TraesCS2B02G224800.1, TraesCS2B02G449100.2, TraesCS2D02G205200.1, TraesCS2D02G426500.1, TraesCS4B02G384200.1, TraesCS5A02G363300.1, TraesCS5A02G376900.1, TraesCS5A02G377000.3, TraesCS5B02G365400.2, TraesCS5B02G380500.1, TraesCS5B02G380600.2, TraesCS5D02G372500.1, TraesCS5D02G386900.1, TraesCS5D02G387000.2
Poaceae	Zea mays	6	Zm00001eb028020_P002, Zm00001eb050840_P001 ... Zm00001eb050850_P003, Zm00001eb104660_P002, Zm00001eb107320_P002, Zm00001eb222640_P003
Poaceae	Zoysia japonica	7	nbis-gene-27444, nbis-gene-31899, nbis-gene-39643 ... nbis-gene-39645, nbis-gene-48049, nbis-gene-50727, nbis-gene-57567
Poaceae	Zoysia macrostachya	9	Zma_g13304, Zma_g15970, Zma_g16100, Zma_g16101, Zma_g29892 ... Zma_g32081, Zma_g3218, Zma_g896, Zma_g897
Portulacaceae	Portulaca oleracea	8	evm.TU.LG01.2172, evm.TU.LG03.1195, evm.TU.LG03.1196 ... evm.TU.LG03.2099, evm.TU.LG12.532, evm.TU.LG14.1369, evm.TU.LG14.401, evm.TU.LG24.492
Posidoniaceae	Posidonia oceanica	1	gene.Posoc03g16160
Rhizophoraceae	Bruguiera sexangula	9	evm.TU.Scaffold_13_RagTag.1079, evm.TU.Scaffold_6_RagTag.54 ... evm.TU.Scaffold_13_RagTag.1080, evm.TU.Scaffold_13_RagTag.1084, evm.TU.Scaffold_1_RagTag.2122, evm.TU.Scaffold_1_RagTag.2124, evm.TU.Scaffold_3_RagTag.1957, evm.TU.Scaffold_3_RagTag.1958, evm.TU.Scaffold_3_RagTag.1964
Rhizophoraceae	Carallia pectinifolia	5	nbisL1-mrna-14856, nbisL1-mrna-14857, nbisL1-mrna-29937 ... nbisL1-mrna-29943, nbisL1-mrna-29944
Rhizophoraceae	Ceriops tagal	5	nbisL1-mrna-10468, nbisL1-mrna-16946, nbisL1-mrna-17896 ... nbisL1-mrna-20585, nbisL1-mrna-581
Rhizophoraceae	Ceriops zippeliana	4	nbisL1-mrna-16444, nbisL1-mrna-16447, nbisL1-mrna-3412 ... nbisL1-mrna-5091
Rhizophoraceae	Kandelia candel	7	add.evm.TU.utg000016l.71, evm.TU.utg000008l.1388 ... evm.TU.utg000011l.39, evm.TU.utg000015l.652, evm.TU.utg000015l.653, evm.TU.utg000015l.657, evm.TU.utg000019l.40
Rhizophoraceae	Kandelia obovata	7	Maker00001166, Maker00001752, Maker00007833, Maker00015431 ... Maker00015535, Maker00015860, Maker00016503
Rhizophoraceae	Rhizophora apiculata	10	nbisL1-mrna-12010, nbisL1-mrna-1791, nbisL1-mrna-18550 ... nbisL1-mrna-18616, nbisL1-mrna-18617, nbisL1-mrna-18618, nbisL1-mrna-18619, nbisL1-mrna-4551, nbisL1-mrna-4552, nbisL1-mrna-4555
Rhizophoraceae	Rhizophora mangle	7	nbisL1-mrna-14057, nbisL1-mrna-14058, nbisL1-mrna-14059 ... nbisL1-mrna-17537, nbisL1-mrna-20718, nbisL1-mrna-22381, nbisL1-mrna-22383
Salicaceae	Populus euphratica	7	populus_peu05906, populus_peu05907, populus_peu05916 ... populus_peu05917, populus_peu23789, populus_peu23790, populus_peu38076
Solanaceae	Lycium barbarum	6	gene-LOC132616932, gene-LOC132618517, gene-LOC132618621 ... gene-LOC132618702, gene-LOC132619227, gene-LOC132633608
Solanaceae	Solanum chilense	2	SOLCI000553500, SOLCI004105000
Solanaceae	Solanum pennellii	2	gene-LOC107025957, gene-LOC107026147
Tamaricaceae	Reaumuria soongarica	1	gene_3213
Tamaricaceae	Tamarix chinensis	1	TC10G2176
Zosteraceae	Zostera marina	1	Zosma03g06770.v3.1