Basic Information
Locus ID:
Lb4G22589
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
U-box domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr04 | 40827400 | 40831318 | + | Lb4G22589 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.30 | 94,986.34 Da | 49.51 | 78.82 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01989 | STK_N | 17 | 168 | 3.59358E-54 | - |
| CDD | cd01989 | STK_N | 17 | 168 | 3.59358E-54 | - |
| Pfam | PF00582 | Universal stress protein family | 18 | 155 | 8.2E-7 | IPR006016 |
| Pfam | PF00069 | Protein kinase domain | 500 | 755 | 1.5E-39 | IPR000719 |
| Pfam | PF00069 | Protein kinase domain | 500 | 755 | 1.5E-39 | IPR000719 |
| Pfam | PF00582 | Universal stress protein family | 18 | 155 | 8.2E-7 | IPR006016 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 482 | 759 | 1.37E-65 | IPR011009 |
| SUPERFAMILY | SSF52402 | Adenine nucleotide alpha hydrolases-like | 18 | 165 | 4.02E-9 | - |
| SUPERFAMILY | SSF52402 | Adenine nucleotide alpha hydrolases-like | 18 | 165 | 4.02E-9 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 482 | 759 | 1.37E-65 | IPR011009 |
| Gene3D | G3DSA:3.40.50.620 | HUPs | 17 | 165 | 3.8E-10 | IPR014729 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 481 | 571 | 9.7E-24 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 481 | 571 | 9.7E-24 | - |
| Gene3D | G3DSA:3.40.50.620 | HUPs | 17 | 165 | 3.8E-10 | IPR014729 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 572 | 779 | 2.7E-47 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 572 | 779 | 2.7E-47 | - |
| SMART | SM00220 | serkin_6 | 499 | 763 | 1.0E-23 | IPR000719 |
| SMART | SM00220 | serkin_6 | 499 | 763 | 1.0E-23 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 499 | 774 | 34.392982 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 499 | 774 | 34.392982 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 617 | 629 | - | IPR008271 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 617 | 629 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 204 | 232 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 204 | 232 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G16760.1 | Protein kinase protein with adenine nucleotide alpha hydrolases-like domain. | 0 |
| RefSeq | XP_024047978.1 | U-box domain-containing protein 35 [Citrus clementina] | 0 |
| Q9FKG6 | U-box domain-containing protein 52 OS=Arabidopsis thaliana OX=3702 GN=PUB52 PE=2 SV=1 | 0 | |
| TrEMBL | A0A1Q3CFF2 | Pkinase domain-containing protein/Usp domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_22256 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology