Basic Information
Locus ID:
Lb4G22436
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Lysosomal
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr04 | 34832872 | 34845651 | - | Lb4G22436 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.72 | 114,350.56 Da | 39.77 | 79.56 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10810 | GH38N_AMII_LAM_like | 41 | 316 | 0.0 | - |
| CDD | cd10810 | GH38N_AMII_LAM_like | 41 | 316 | 0.0 | - |
| Pfam | PF09261 | Alpha mannosidase middle domain | 358 | 450 | 3.4E-20 | IPR015341 |
| Pfam | PF01074 | Glycosyl hydrolases family 38 N-terminal domain | 42 | 353 | 1.4E-92 | IPR000602 |
| Pfam | PF17677 | Glycosyl hydrolases family 38 C-terminal beta sandwich domain | 902 | 1010 | 2.0E-10 | IPR041147 |
| Pfam | PF07748 | Glycosyl hydrolases family 38 C-terminal domain | 605 | 820 | 1.1E-45 | IPR011682 |
| Pfam | PF17677 | Glycosyl hydrolases family 38 C-terminal beta sandwich domain | 902 | 1010 | 2.0E-10 | IPR041147 |
| Pfam | PF07748 | Glycosyl hydrolases family 38 C-terminal domain | 605 | 820 | 1.1E-45 | IPR011682 |
| Pfam | PF01074 | Glycosyl hydrolases family 38 N-terminal domain | 42 | 353 | 1.4E-92 | IPR000602 |
| Pfam | PF09261 | Alpha mannosidase middle domain | 358 | 450 | 3.4E-20 | IPR015341 |
| SUPERFAMILY | SSF88688 | Families 57/38 glycoside transferase middle domain | 357 | 450 | 3.04E-27 | IPR028995 |
| SUPERFAMILY | SSF88688 | Families 57/38 glycoside transferase middle domain | 357 | 450 | 3.04E-27 | IPR028995 |
| SUPERFAMILY | SSF88713 | Glycoside hydrolase/deacetylase | 30 | 356 | 4.36E-109 | IPR011330 |
| SUPERFAMILY | SSF88713 | Glycoside hydrolase/deacetylase | 30 | 356 | 4.36E-109 | IPR011330 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 463 | 1014 | 2.35E-138 | IPR011013 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 463 | 1014 | 2.35E-138 | IPR011013 |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 401 | 455 | 2.3E-20 | IPR037094 |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 322 | 400 | 3.3E-30 | IPR037094 |
| Gene3D | G3DSA:2.70.98.30 | - | 602 | 868 | 5.6E-93 | - |
| Gene3D | G3DSA:3.20.110.10 | Glycoside hydrolase 38, N terminal domain | 41 | 321 | 7.3E-122 | IPR027291 |
| Gene3D | G3DSA:2.70.98.30 | - | 602 | 868 | 5.6E-93 | - |
| Gene3D | G3DSA:2.60.40.1360 | - | 887 | 1018 | 5.0E-35 | - |
| Gene3D | G3DSA:2.60.40.1180 | - | 478 | 598 | 4.2E-27 | IPR013780 |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 322 | 400 | 3.3E-30 | IPR037094 |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 401 | 455 | 2.3E-20 | IPR037094 |
| Gene3D | G3DSA:3.20.110.10 | Glycoside hydrolase 38, N terminal domain | 41 | 321 | 7.3E-122 | IPR027291 |
| Gene3D | G3DSA:2.60.40.1360 | - | 887 | 1018 | 5.0E-35 | - |
| Gene3D | G3DSA:2.60.40.1180 | - | 478 | 598 | 4.2E-27 | IPR013780 |
| SMART | SM00872 | Alpha_mann_mid_2 | 358 | 432 | 2.0E-21 | IPR015341 |
| SMART | SM00872 | Alpha_mann_mid_2 | 358 | 432 | 2.0E-21 | IPR015341 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G13980.1 | Glycosyl hydrolase family 38 protein. | 0 |
| RefSeq | XP_042969302.1 | probable alpha-mannosidase At5g13980 [Carya illinoinensis] | 0 |
| Q8LPJ3 | Probable alpha-mannosidase At5g13980 OS=Arabidopsis thaliana OX=3702 GN=At5g13980 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5B7CBJ8 | Alpha-mannosidase OS=Davidia involucrata OX=16924 GN=Din_047212 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology