Basic Information
Locus ID:
Lb4G22358
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Short Name:
AFB3
Description:
Protein AUXIN SIGNALING F-BOX
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr04 | 32372377 | 32375011 | + | Lb4G22358 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.99 | 62,240.67 Da | 44.96 | 96.58 | 0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18791 | Transport inhibitor response 1 protein domain | 52 | 97 | 1.7E-24 | IPR041101 |
| Pfam | PF18511 | F-box | 4 | 30 | 1.3E-10 | IPR041567 |
| Pfam | PF13516 | Leucine Rich repeat | 139 | 155 | 0.32 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 139 | 155 | 0.32 | IPR001611 |
| Pfam | PF18791 | Transport inhibitor response 1 protein domain | 52 | 97 | 1.7E-24 | IPR041101 |
| Pfam | PF18511 | F-box | 4 | 30 | 1.3E-10 | IPR041567 |
| SUPERFAMILY | SSF52047 | RNI-like | 15 | 506 | 2.83E-32 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 15 | 506 | 2.83E-32 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 31 | 559 | 1.1E-164 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 31 | 559 | 1.1E-164 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 3 | 30 | 8.0E-9 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 3 | 30 | 8.0E-9 | - |
| SMART | SM00367 | LRR_CC_2 | 114 | 139 | 13.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 286 | 309 | 200.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 403 | 426 | 320.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 89 | 113 | 29.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 452 | 477 | 510.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 343 | 367 | 2.5 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 286 | 309 | 200.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 89 | 113 | 29.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 343 | 367 | 2.5 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 452 | 477 | 510.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 114 | 139 | 13.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 403 | 426 | 320.0 | IPR006553 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G26810.1 | auxin signaling F-box 2. | 0 |
| RefSeq | XP_010682986.2 | protein AUXIN SIGNALING F-BOX 2 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9LW29 | Protein AUXIN SIGNALING F-BOX 2 OS=Arabidopsis thaliana OX=3702 GN=AFB2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0G4AQG1 | Transport inhibitor response protein 1 OS=Dimocarpus longan OX=128017 GN=TIR1 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology