Basic Information
Locus ID:
Lb4G22331
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Encoded by
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr04 | 31919304 | 31934538 | - | Lb4G22331 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.58 | 58,351.50 Da | 30.29 | 74.39 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01074 | Glycosyl hydrolases family 38 N-terminal domain | 3 | 94 | 1.2E-17 | IPR000602 |
| Pfam | PF07748 | Glycosyl hydrolases family 38 C-terminal domain | 341 | 511 | 9.8E-27 | IPR011682 |
| Pfam | PF07748 | Glycosyl hydrolases family 38 C-terminal domain | 341 | 511 | 9.8E-27 | IPR011682 |
| Pfam | PF01074 | Glycosyl hydrolases family 38 N-terminal domain | 3 | 94 | 1.2E-17 | IPR000602 |
| Pfam | PF09261 | Alpha mannosidase middle domain | 99 | 191 | 4.8E-21 | IPR015341 |
| Pfam | PF09261 | Alpha mannosidase middle domain | 99 | 191 | 4.8E-21 | IPR015341 |
| SUPERFAMILY | SSF88713 | Glycoside hydrolase/deacetylase | 2 | 97 | 2.08E-26 | IPR011330 |
| SUPERFAMILY | SSF88688 | Families 57/38 glycoside transferase middle domain | 98 | 193 | 4.58E-28 | IPR028995 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 200 | 512 | 2.67E-76 | IPR011013 |
| SUPERFAMILY | SSF88713 | Glycoside hydrolase/deacetylase | 2 | 97 | 2.08E-26 | IPR011330 |
| SUPERFAMILY | SSF88688 | Families 57/38 glycoside transferase middle domain | 98 | 193 | 4.58E-28 | IPR028995 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 200 | 512 | 2.67E-76 | IPR011013 |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 142 | 196 | 3.9E-19 | IPR037094 |
| Gene3D | G3DSA:3.20.110.10 | Glycoside hydrolase 38, N terminal domain | 1 | 62 | 2.1E-18 | IPR027291 |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 63 | 141 | 3.1E-32 | IPR037094 |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 142 | 196 | 3.9E-19 | IPR037094 |
| Gene3D | G3DSA:2.70.98.30 | - | 336 | 515 | 2.3E-57 | - |
| Gene3D | G3DSA:2.60.40.1180 | - | 204 | 316 | 2.8E-27 | IPR013780 |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 63 | 141 | 3.1E-32 | IPR037094 |
| Gene3D | G3DSA:3.20.110.10 | Glycoside hydrolase 38, N terminal domain | 1 | 62 | 2.1E-18 | IPR027291 |
| Gene3D | G3DSA:2.60.40.1180 | - | 204 | 316 | 2.8E-27 | IPR013780 |
| Gene3D | G3DSA:2.70.98.30 | - | 336 | 515 | 2.3E-57 | - |
| SMART | SM00872 | Alpha_mann_mid_2 | 99 | 173 | 4.8E-20 | IPR015341 |
| SMART | SM00872 | Alpha_mann_mid_2 | 99 | 173 | 4.8E-20 | IPR015341 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G26720.4 | - | 0 |
| RefSeq | XP_034706987.1 | alpha-mannosidase At3g26720-like [Vitis riparia] | 0 |
| P94078 | Alpha-mannosidase At3g26720 OS=Arabidopsis thaliana OX=3702 GN=At3g26720 PE=1 SV=1 | 0 | |
| TrEMBL | D7SVH6 | Alpha-mannosidase OS=Vitis vinifera OX=29760 GN=VIT_14s0068g01110 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology