halophFGD

Basic Information

Locus ID: Lb4G22329

Species & Taxonomic ID: Limonium bicolor & 293754

Genome Assembly: GCA_023374045.1

Description: Lysosomal

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr04	31874027	31886547	-	Lb4G22329

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.73	104,374.48 Da	40.70	82.08	-0.33

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd10810	GH38N_AMII_LAM_like	14	252	8.73797E-143	-
CDD	cd10810	GH38N_AMII_LAM_like	14	252	8.73797E-143	-
Pfam	PF01074	Glycosyl hydrolases family 38 N-terminal domain	138	289	4.3E-24	IPR000602
Pfam	PF09261	Alpha mannosidase middle domain	294	386	3.0E-20	IPR015341
Pfam	PF01074	Glycosyl hydrolases family 38 N-terminal domain	15	137	7.7E-40	IPR000602
Pfam	PF17677	Glycosyl hydrolases family 38 C-terminal beta sandwich domain	810	919	1.7E-10	IPR041147
Pfam	PF07748	Glycosyl hydrolases family 38 C-terminal domain	541	725	2.3E-19	IPR011682
Pfam	PF17677	Glycosyl hydrolases family 38 C-terminal beta sandwich domain	810	919	1.7E-10	IPR041147
Pfam	PF01074	Glycosyl hydrolases family 38 N-terminal domain	138	289	4.3E-24	IPR000602
Pfam	PF01074	Glycosyl hydrolases family 38 N-terminal domain	15	137	7.7E-40	IPR000602
Pfam	PF09261	Alpha mannosidase middle domain	294	386	3.0E-20	IPR015341
Pfam	PF07748	Glycosyl hydrolases family 38 C-terminal domain	541	725	2.3E-19	IPR011682
SUPERFAMILY	SSF74650	Galactose mutarotase-like	399	922	4.24E-115	IPR011013
SUPERFAMILY	SSF88688	Families 57/38 glycoside transferase middle domain	293	386	2.68E-27	IPR028995
SUPERFAMILY	SSF88688	Families 57/38 glycoside transferase middle domain	293	386	2.68E-27	IPR028995
SUPERFAMILY	SSF88713	Glycoside hydrolase/deacetylase	3	292	2.28E-86	IPR011330
SUPERFAMILY	SSF88713	Glycoside hydrolase/deacetylase	3	292	2.28E-86	IPR011330
SUPERFAMILY	SSF74650	Galactose mutarotase-like	399	922	4.24E-115	IPR011013
Gene3D	G3DSA:1.20.1270.50	Glycoside hydrolase family 38, central domain	258	336	2.9E-30	IPR037094
Gene3D	G3DSA:3.20.110.10	Glycoside hydrolase 38, N terminal domain	138	257	9.1E-29	IPR027291
Gene3D	G3DSA:2.60.40.1180	-	414	534	2.7E-27	IPR013780
Gene3D	G3DSA:2.70.98.30	-	538	772	2.1E-59	-
Gene3D	G3DSA:3.20.110.10	Glycoside hydrolase 38, N terminal domain	14	137	6.8E-54	IPR027291
Gene3D	G3DSA:1.20.1270.50	Glycoside hydrolase family 38, central domain	337	392	1.9E-20	IPR037094
Gene3D	G3DSA:2.60.40.1180	-	414	534	2.7E-27	IPR013780
Gene3D	G3DSA:1.20.1270.50	Glycoside hydrolase family 38, central domain	337	392	1.9E-20	IPR037094
Gene3D	G3DSA:1.20.1270.50	Glycoside hydrolase family 38, central domain	258	336	2.9E-30	IPR037094
Gene3D	G3DSA:2.60.40.1360	-	795	926	4.3E-35	-
Gene3D	G3DSA:2.60.40.1360	-	795	926	4.3E-35	-
Gene3D	G3DSA:3.20.110.10	Glycoside hydrolase 38, N terminal domain	14	137	6.8E-54	IPR027291
Gene3D	G3DSA:3.20.110.10	Glycoside hydrolase 38, N terminal domain	138	257	9.1E-29	IPR027291
Gene3D	G3DSA:2.70.98.30	-	538	772	2.1E-59	-
SMART	SM00872	Alpha_mann_mid_2	294	368	2.0E-21	IPR015341
SMART	SM00872	Alpha_mann_mid_2	294	368	2.0E-21	IPR015341

Gene Ontology

Biological Process:

GO:0005975 (carbohydrate metabolic process) GO:0006013 (mannose metabolic process)

Molecular Function:

GO:0003824 (catalytic activity) GO:0004559 (alpha-mannosidase activity) GO:0030246 (carbohydrate binding)

KEGG Pathway

KO Term:

K01191 (alpha-mannosidase [EC:3.2.1.24])

Pathway:

ko00511 (Other glycan degradation) map00511 (Other glycan degradation)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G13980.1	Glycosyl hydrolase family 38 protein.
RefSeq	XP_042969302.1	probable alpha-mannosidase At5g13980 [Carya illinoinensis]
Swiss-Prot	Q8LPJ3	Probable alpha-mannosidase At5g13980 OS=Arabidopsis thaliana OX=3702 GN=At5g13980 PE=2 SV=1
TrEMBL	A0A8T1QWV4	alpha-mannosidase OS=Carya illinoinensis OX=32201 GN=CIPAW_03G002100 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	3	jg13428, jg39595, jg40510
Aizoaceae	Mesembryanthemum crystallinum	2	gene_24972, gene_24973
Amaranthaceae	Atriplex hortensis	2	Ah012639, Ah026844
Amaranthaceae	Beta vulgaris	4	BVRB_6g130460, BVRB_6g151840, BVRB_6g151860, BVRB_6g151880
Amaranthaceae	Salicornia bigelovii	6	Sbi_jg13726, Sbi_jg42440, Sbi_jg42441, Sbi_jg45047 ... Sbi_jg45048, Sbi_jg52190
Amaranthaceae	Salicornia europaea	3	Seu_jg27107, Seu_jg27108, Seu_jg9659
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00002256, GOSA_00002259, GOSA_00017535
Amaranthaceae	Suaeda glauca	7	Sgl31833, Sgl31834, Sgl33268, Sgl37111, Sgl37112, Sgl38598 ... Sgl38658
Amaranthaceae	Chenopodium album	9	gene:ENSEOMG00000000675, gene:ENSEOMG00000000906 ... gene:ENSEOMG00000000961, gene:ENSEOMG00000002801, gene:ENSEOMG00000003450, gene:ENSEOMG00000003511, gene:ENSEOMG00000026057, gene:ENSEOMG00000026245, gene:ENSEOMG00000027806
Amaranthaceae	Chenopodium quinoa	6	CQ.Regalona.r1.6AG0008760, CQ.Regalona.r1.6AG0008770 ... CQ.Regalona.r1.6AG0019940, CQ.Regalona.r1.6BG0009560, CQ.Regalona.r1.6BG0009570, CQ.Regalona.r1.6BG0021010
Anacardiaceae	Pistacia vera	3	pistato.v30012530, pistato.v30021330, pistato.v30210160
Apiaceae	Apium graveolens	2	Ag7G01388, Ag7G02415
Arecaceae	Cocos nucifera	4	COCNU_02G015710, COCNU_07G002430, COCNU_07G002440 ... COCNU_15G005680
Arecaceae	Phoenix dactylifera	3	gene-LOC103698444, gene-LOC103706173, gene-LOC103708053
Asparagaceae	Asparagus officinalis	2	AsparagusV1_02.1219.V1.1, AsparagusV1_04.2142.V1.1
Asteraceae	Flaveria trinervia	4	Ftri18G02175, Ftri18G08656, Ftri18G15101, Ftri1G23261
Brassicaceae	Arabidopsis thaliana	3	AT3G26720.1, AT5G13980.1, AT5G66150.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10003575m.g.v1.0, Thhalv10003577m.g.v1.0 ... Thhalv10012546m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp2g15840.v2.2, Sp2g30540.v2.2, Sp6g30020.v2.2
Brassicaceae	Brassica nigra	3	BniB02g066980.2N, BniB07g044560.2N, BniB08g006640.2N
Casuarinaceae	Casuarina equisetifolia	5	Ceq01G1939, Ceq06G0156, Ceq06G0157, Ceq06G0158, Ceq08G0040
Casuarinaceae	Casuarina glauca	4	Cgl01G2105, Cgl06G0172, Cgl06G0173, Cgl08G0041
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno05g01950
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate01g22290, gene.Thate01g26240
Malvaceae	Hibiscus hamabo Siebold & Zucc.	2	nbisL1-mrna-10889, nbisL1-mrna-2318
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG02.2780, evm.TU.LG05.55
Plantaginaceae	Plantago ovata	3	Pov_00016919, Pov_00033050, Pov_00038726
Plumbaginaceae	Limonium bicolor	6	Lb3G18068, Lb4G22329, Lb4G22330, Lb4G22331, Lb4G22436 ... Lb4G22437
Poaceae	Echinochloa crus-galli	7	AH01.2593, AH01.2594, AH04.1449, BH04.1470, CH01.3114 ... CH01.3117, CH04.1677
Poaceae	Eleusine coracana subsp. coracana	3	gene-QOZ80_2AG0119610, gene-QOZ80_9AG0687140 ... gene-QOZ80_9BG0713390
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.1HG0019680.1, HORVU.MOREX.r3.5HG0526940.1
Poaceae	Lolium multiflorum	3	gene-QYE76_003603, gene-QYE76_003653, gene-QYE76_070688
Poaceae	Oryza coarctata	3	Oco19G000670, Oco21G006420, Oco22G007540
Poaceae	Oryza sativa	2	LOC_Os10g05069.1, LOC_Os11g32260.1
Poaceae	Paspalum vaginatum	6	gene-BS78_01G260800, gene-BS78_01G260900, gene-BS78_K024300 ... gene-BS78_01G261000, gene-BS78_05G155800, gene-BS78_K147300
Poaceae	Puccinellia tenuiflora	4	Pt_Chr0103105, Pt_Chr0504909, Pt_Chr0704185, Pt_Chr0704203
Poaceae	Sporobolus alterniflorus	5	Chr07G016910, Chr20G008310, Chr29G007730, Chr31G005910 ... Chr31G005940
Poaceae	Thinopyrum elongatum	2	Tel1E01G171400, Tel5E01G766600
Poaceae	Triticum dicoccoides	6	gene_TRIDC1AG012450, gene_TRIDC1BG015320 ... gene_TRIDC1BG015330, gene_TRIDC2AG064390, gene_TRIDC5AG068880, gene_TRIDC5BG074340
Poaceae	Triticum aestivum	8	TraesCS1A02G087500.2, TraesCS1B02G106400.2 ... TraesCS1B02G106500.1, TraesCS1D02G088800.1, TraesCS2A02G451000.1, TraesCS5A02G483300.1, TraesCS5B02G496400.1, TraesCS5D02G496800.2
Poaceae	Zea mays	3	Zm00001eb026300_P001, Zm00001eb026330_P001 ... Zm00001eb113240_P001
Poaceae	Zoysia japonica	2	nbis-gene-42299, nbis-gene-45656
Poaceae	Zoysia macrostachya	2	Zma_g15836, Zma_g18902
Portulacaceae	Portulaca oleracea	8	evm.TU.LG03.2233, evm.TU.LG03.2234, evm.TU.LG03.2236 ... evm.TU.LG05.332, evm.TU.LG17.1285, evm.TU.LG17.1286, evm.TU.LG17.1288, evm.TU.LG25.979
Posidoniaceae	Posidonia oceanica	2	gene.Posoc01g04310, gene.Posoc05g14260
Rhizophoraceae	Bruguiera sexangula	4	evm.TU.Scaffold_11_RagTag.1193, evm.TU.Scaffold_3_RagTag.85 ... evm.TU.Scaffold_11_RagTag.237, evm.TU.Scaffold_11_RagTag.238
Rhizophoraceae	Carallia pectinifolia	7	nbisL1-mrna-12382, nbisL1-mrna-12494, nbisL1-mrna-14182 ... nbisL1-mrna-14183, nbisL1-mrna-237, nbisL1-mrna-243, nbisL1-mrna-246
Rhizophoraceae	Ceriops tagal	4	nbisL1-mrna-14327, nbisL1-mrna-18667, nbisL1-mrna-3055 ... nbisL1-mrna-3056
Rhizophoraceae	Ceriops zippeliana	4	nbisL1-mrna-12761, nbisL1-mrna-14326, nbisL1-mrna-14327 ... nbisL1-mrna-5886
Rhizophoraceae	Kandelia candel	4	evm.TU.utg000005l.218, evm.TU.utg000005l.219 ... evm.TU.utg000010l.248, evm.TU.utg000019l.1159
Rhizophoraceae	Kandelia obovata	4	Maker00006815, Maker00008942, Maker00010101, Maker00010260
Rhizophoraceae	Rhizophora apiculata	4	nbisL1-mrna-379, nbisL1-mrna-380, nbisL1-mrna-618 ... nbisL1-mrna-6567
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-18974, nbisL1-mrna-18975, nbisL1-mrna-2435
Salicaceae	Populus euphratica	6	populus_peu23271, populus_peu27111, populus_peu27112 ... populus_peu30350, populus_peu30953, populus_peu30954
Solanaceae	Lycium barbarum	3	gene-LOC132599619, gene-LOC132625127, gene-LOC132625128
Solanaceae	Solanum chilense	2	SOLCI001430500, SOLCI005536800
Solanaceae	Solanum pennellii	2	gene-LOC107009314, gene-LOC107023054
Tamaricaceae	Reaumuria soongarica	3	gene_13607, gene_16258, gene_2130
Tamaricaceae	Tamarix chinensis	3	TC01G3392, TC03G1178, TC09G0119
Zosteraceae	Zostera marina	2	Zosma01g25650.v3.1, Zosma02g01290.v3.1