Basic Information
Locus ID:
Lb4G22300
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Small ubiquitin-related modifier
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr04 | 31173288 | 31176563 | - | Lb4G22300 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.74 | 11,125.30 Da | 38.05 | 58.35 | -0.82 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16116 | Ubl_Smt3_like | 17 | 89 | 2.6031E-42 | - |
| CDD | cd16116 | Ubl_Smt3_like | 17 | 89 | 2.6031E-42 | - |
| Pfam | PF11976 | Ubiquitin-2 like Rad60 SUMO-like | 18 | 87 | 6.7E-23 | IPR022617 |
| Pfam | PF11976 | Ubiquitin-2 like Rad60 SUMO-like | 18 | 87 | 6.7E-23 | IPR022617 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 4 | 95 | 7.58E-27 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 4 | 95 | 7.58E-27 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 93 | 1.0E-37 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 93 | 1.0E-37 | - |
| SMART | SM00213 | ubq_7 | 18 | 89 | 1.7E-10 | IPR000626 |
| SMART | SM00213 | ubq_7 | 18 | 89 | 1.7E-10 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 16 | 93 | 14.251209 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 16 | 93 | 14.251209 | IPR000626 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G26840.1 | small ubiquitin-like modifier 1. Encodes a small ubiquitin-like modifier (SUMO) polypeptide that becomes covalently attached to various intracellular protein targets, much like ubiquitination, leading to post-translational modification of those targets. | 0 |
| RefSeq | XP_009137622.1 | small ubiquitin-related modifier 1 [Brassica rapa] | 0 |
| P55857 | Small ubiquitin-related modifier 1 OS=Oryza sativa subsp. japonica OX=39947 GN=SUMO1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8J5VRI0 | Ubiquitin-like domain-containing protein OS=Zizania palustris OX=103762 GN=GUJ93_ZPchr0001g30494 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology