Basic Information
Locus ID:
Lb4G22028
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr04 | 20958893 | 20962001 | + | Lb4G22028 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.86 | 43,990.88 Da | 53.23 | 79.35 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 350 | 392 | 4.98883E-18 | - |
| CDD | cd16454 | RING-H2_PA-TM-RING | 350 | 392 | 4.98883E-18 | - |
| Pfam | PF13947 | Wall-associated receptor kinase galacturonan-binding | 50 | 111 | 2.5E-15 | IPR025287 |
| Pfam | PF13947 | Wall-associated receptor kinase galacturonan-binding | 50 | 111 | 2.5E-15 | IPR025287 |
| Pfam | PF13639 | Ring finger domain | 350 | 392 | 1.4E-13 | IPR001841 |
| Pfam | PF13639 | Ring finger domain | 350 | 392 | 1.4E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 343 | 394 | 9.24E-20 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 343 | 394 | 9.24E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 315 | 396 | 1.7E-20 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 315 | 396 | 1.7E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 350 | 391 | 7.4E-8 | IPR001841 |
| SMART | SM00184 | ring_2 | 350 | 391 | 7.4E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 350 | 392 | 12.769585 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 350 | 392 | 12.769585 | IPR001841 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G53110.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021909513.1 | putative RING-H2 finger protein ATL21A [Carica papaya] | 0 |
| P0CH01 | Putative RING-H2 finger protein ATL21A OS=Arabidopsis thaliana OX=3702 GN=ATL21A PE=3 SV=1 | 0 | |
| TrEMBL | A0A7C8YDV5 | RING-type domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology