Basic Information
Locus ID:
Lb4G21990
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Belongs to the NPH3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr04 | 19482194 | 19484829 | - | Lb4G21990 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.97 | 79,561.89 Da | 52.94 | 77.77 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18312 | BTB_POZ_NPY3-like | 42 | 150 | 4.93021E-50 | - |
| CDD | cd18312 | BTB_POZ_NPY3-like | 42 | 150 | 4.93021E-50 | - |
| Pfam | PF03000 | NPH3 family | 249 | 575 | 1.0E-103 | IPR027356 |
| Pfam | PF03000 | NPH3 family | 249 | 575 | 1.0E-103 | IPR027356 |
| SUPERFAMILY | SSF54695 | POZ domain | 41 | 140 | 1.49E-12 | IPR011333 |
| SUPERFAMILY | SSF54695 | POZ domain | 41 | 140 | 1.49E-12 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 39 | 165 | 1.4E-6 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 39 | 165 | 1.4E-6 | IPR011333 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 51 | 123 | 8.627439 | IPR000210 |
| ProSiteProfiles | PS51649 | NPH3 domain profile. | 249 | 599 | 90.316063 | IPR027356 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 51 | 123 | 8.627439 | IPR000210 |
| ProSiteProfiles | PS51649 | NPH3 domain profile. | 249 | 599 | 90.316063 | IPR027356 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 31 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 692 | 725 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 664 | 683 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 31 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 692 | 725 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 664 | 683 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G64330.1 | Phototropic-responsive NPH3 family protein. Involved in blue light response signaling pathway; interacts with the blue light photoreceptor NPH1.Null mutations abolish phototrophic responses of etiolated seedlings to low fluence blue light. Protein contains multiple protein-protein interaction domains. | 0 |
| RefSeq | XP_021644026.1 | root phototropism protein 3-like [Hevea brasiliensis] | 0 |
| Q9FMF5 | Root phototropism protein 3 OS=Arabidopsis thaliana OX=3702 GN=RPT3 PE=1 SV=2 | 0 | |
| TrEMBL | A0A5B7B3H8 | Putative root phototropism protein 3 OS=Davidia involucrata OX=16924 GN=Din_032485 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg26349, jg28512 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_21527 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah009370 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g221680 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg10865, Sbi_jg47453 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg21697 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00018744 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl55626, Sgl60838 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000016992, gene:ENSEOMG00000017441 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7BG0001560, CQ.Regalona.r1.9AG0022890 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30102860 |
| Apiaceae | Apium graveolens | 2 | Ag1G00803, Ag9G00292 |
| Arecaceae | Cocos nucifera | 2 | COCNU_03G007380, COCNU_13G003710 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103711029, gene-LOC103722290 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_10.1155.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri15G25380 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G64330.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10003710m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g27390.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB06g012520.2N, BniB07g009480.2N, BniB07g042740.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G0606 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G0644 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g02380 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate07g04680 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG08.1381 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00002146 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb4G21990, Lb4G21994 |
| Poaceae | Echinochloa crus-galli | 2 | BH07.3930, CH07.2174 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0134770, gene-QOZ80_2BG0190260 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0552590.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_022985, gene-QYE76_023109, gene-QYE76_023113 |
| Poaceae | Oryza coarctata | 1 | Oco04G013190 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g35970.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G170500 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr09G013720, Chr13G009570 |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G208600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC6AG010470, gene_TRIDC6BG016650 |
| Poaceae | Triticum aestivum | 3 | TraesCS6A02G085100.1, TraesCS6B02G117400.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb244600_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-20686 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG08.429, evm.TU.LG22.1431 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc02g30010, gene.Posoc04g17490 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_1_RagTag.1929, evm.TU.Scaffold_2_RagTag.514 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-4679, nbisL1-mrna-5707 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-2066, nbisL1-mrna-9478 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-3593, nbisL1-mrna-9669 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000009l.651, evm.TU.utg000016l.317 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00005610, Maker00016656 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-2610, nbisL1-mrna-4879 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-13873, nbisL1-mrna-16592 |
| Salicaceae | Populus euphratica | 2 | populus_peu22755, populus_peu24177 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132598824, gene-LOC132606430 |
| Solanaceae | Solanum chilense | 2 | SOLCI000740900, SOLCI006896500 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107008114, gene-LOC107031991 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.12910_chr02_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G0547 |