Basic Information
Locus ID:
Lb4G21554
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Autophagy-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr04 | 3828235 | 3836203 | - | Lb4G21554 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.60 | 49,651.82 Da | 45.81 | 70.66 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 309 | 334 | 0.016 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 309 | 334 | 0.016 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 122 | 346 | 8.99E-24 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 122 | 346 | 8.99E-24 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 112 | 456 | 1.5E-17 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 112 | 456 | 1.5E-17 | IPR015943 |
| SMART | SM00320 | WD40_4 | 293 | 334 | 0.091 | IPR001680 |
| SMART | SM00320 | WD40_4 | 293 | 334 | 0.091 | IPR001680 |
| SMART | SM00320 | WD40_4 | 250 | 290 | 0.012 | IPR001680 |
| SMART | SM00320 | WD40_4 | 250 | 290 | 0.012 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 49 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 49 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62770.1 | Transducin/WD40 repeat-like superfamily protein. Required for autophagosome formation during nutrient deprivation and senescence. | 0 |
| RefSeq | XP_021763109.1 | autophagy-related protein 18a-like [Chenopodium quinoa] | 0 |
| Q93VB2 | Autophagy-related protein 18a OS=Arabidopsis thaliana OX=3702 GN=ATG18A PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C8YQG3 | Autophagy-related protein 18a-like OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology