Basic Information
Locus ID:
Lb4G21541
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
ATP-dependent RNA helicase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr04 | 3367796 | 3372377 | + | Lb4G21541 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.07 | 45,986.38 Da | 41.09 | 97.20 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18045 | DEADc_EIF4AIII_DDX48 | 36 | 236 | 9.44057E-120 | - |
| CDD | cd18787 | SF2_C_DEAD | 247 | 377 | 5.96143E-63 | - |
| CDD | cd18045 | DEADc_EIF4AIII_DDX48 | 36 | 236 | 9.44057E-120 | - |
| CDD | cd18787 | SF2_C_DEAD | 247 | 377 | 5.96143E-63 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 59 | 221 | 1.5E-40 | IPR011545 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 59 | 221 | 1.5E-40 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 260 | 368 | 1.6E-31 | IPR001650 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 260 | 368 | 1.6E-31 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 102 | 390 | 1.52E-74 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 102 | 390 | 1.52E-74 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 20 | 238 | 2.1E-63 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 239 | 407 | 2.8E-60 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 20 | 238 | 2.1E-63 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 239 | 407 | 2.8E-60 | IPR027417 |
| SMART | SM00487 | ultradead3 | 53 | 250 | 1.8E-54 | IPR014001 |
| SMART | SM00490 | helicmild6 | 287 | 368 | 2.1E-34 | IPR001650 |
| SMART | SM00490 | helicmild6 | 287 | 368 | 2.1E-34 | IPR001650 |
| SMART | SM00487 | ultradead3 | 53 | 250 | 1.8E-54 | IPR014001 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 65 | 235 | 27.522787 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 246 | 407 | 26.8563 | IPR001650 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 34 | 62 | 10.185193 | IPR014014 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 246 | 407 | 26.8563 | IPR001650 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 34 | 62 | 10.185193 | IPR014014 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 65 | 235 | 27.522787 | IPR014001 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G19760.1 | eukaryotic initiation factor 4A-III. Encodes an RNA helicase that may be a component of the Exon Junction Complex. Subcellular localization is modulated by stress. Under normal conditions it is localized to the nuceloplasm but under hyopoxic conditions it localizes to the nucleolus and splicing speckles. | 0 |
| RefSeq | XP_034687754.1 | eukaryotic initiation factor 4A-3 [Vitis riparia] | 0 |
| P41380 | Eukaryotic initiation factor 4A-3 OS=Nicotiana plumbaginifolia OX=4092 PE=2 SV=1 | 0 | |
| TrEMBL | A0A438HR45 | Eukaryotic initiation factor 4A-3 OS=Vitis vinifera OX=29760 GN=IF4A3_0 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology