Basic Information
Locus ID:
Lb3G21294
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
E3 ubiquitin-protein ligase ATL23-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 394255600 | 394274056 | + | Lb3G21294 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.03 | 22,245.27 Da | 55.35 | 91.15 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF17123 | RING-like zinc finger | 58 | 86 | 4.6E-10 | IPR001841 |
| Pfam | PF17123 | RING-like zinc finger | 58 | 86 | 4.6E-10 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 42 | 96 | 9.03E-13 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 42 | 96 | 9.03E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 22 | 97 | 1.6E-11 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 22 | 97 | 1.6E-11 | IPR013083 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G18773.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_049355369.1 | E3 ubiquitin-protein ligase ATL23-like [Solanum verrucosum] | 0 |
| Q9LS99 | RING-H2 finger protein ATL77 OS=Arabidopsis thaliana OX=3702 GN=ATL77 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7C8YHC4 | RING-type domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology