Basic Information
Locus ID:
Lb3G21293
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 394245755 | 394248027 | + | Lb3G21293 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.79 | 39,832.80 Da | 56.47 | 94.61 | 0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 129 | 172 | 1.43329E-16 | - |
| CDD | cd16454 | RING-H2_PA-TM-RING | 129 | 172 | 1.43329E-16 | - |
| Pfam | PF13639 | Ring finger domain | 128 | 172 | 1.7E-12 | IPR001841 |
| Pfam | PF13639 | Ring finger domain | 128 | 172 | 1.7E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 112 | 178 | 4.8E-20 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 112 | 178 | 4.8E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 109 | 181 | 2.8E-18 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 109 | 181 | 2.8E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 130 | 171 | 1.7E-7 | IPR001841 |
| SMART | SM00184 | ring_2 | 130 | 171 | 1.7E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 130 | 172 | 12.25323 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 130 | 172 | 12.25323 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G42200.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_019453331.1 | PREDICTED: E3 ubiquitin-protein ligase ATL23-like [Lupinus angustifolius] | 0 |
| Q8L9W3 | E3 ubiquitin-protein ligase ATL23 OS=Arabidopsis thaliana OX=3702 GN=ATL23 PE=1 SV=2 | 0 | |
| TrEMBL | A0A1J7H125 | RING-type domain-containing protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_17666 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology