Basic Information
Locus ID:
Lb3G21108
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
DA1-related
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 382230367 | 382234655 | + | Lb3G21108 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.61 | 56,676.56 Da | 55.81 | 61.41 | -0.61 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09396 | LIM_DA1 | 125 | 177 | 7.87662E-23 | - |
| CDD | cd09396 | LIM_DA1 | 125 | 177 | 7.87662E-23 | - |
| Pfam | PF00412 | LIM domain | 125 | 178 | 5.6E-7 | IPR001781 |
| Pfam | PF12315 | Protein DA1 | 274 | 496 | 1.7E-97 | IPR022087 |
| Pfam | PF12315 | Protein DA1 | 274 | 496 | 1.7E-97 | IPR022087 |
| Pfam | PF00412 | LIM domain | 125 | 178 | 5.6E-7 | IPR001781 |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 118 | 150 | 6.01E-5 | - |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 118 | 150 | 6.01E-5 | - |
| Gene3D | G3DSA:2.10.110.10 | Cysteine Rich Protein | 120 | 184 | 3.4E-11 | - |
| Gene3D | G3DSA:2.10.110.10 | Cysteine Rich Protein | 120 | 184 | 3.4E-11 | - |
| SMART | SM00132 | lim_4 | 124 | 176 | 1.6E-6 | IPR001781 |
| SMART | SM00132 | lim_4 | 124 | 176 | 1.6E-6 | IPR001781 |
| ProSiteProfiles | PS50023 | LIM domain profile. | 123 | 183 | 10.4644 | IPR001781 |
| ProSiteProfiles | PS50023 | LIM domain profile. | 123 | 183 | 10.4644 | IPR001781 |
| ProSitePatterns | PS00478 | LIM zinc-binding domain signature. | 125 | 159 | - | IPR001781 |
| ProSitePatterns | PS00478 | LIM zinc-binding domain signature. | 125 | 159 | - | IPR001781 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 29 | 92 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 18 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 429 | 445 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 108 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 429 | 448 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 29 | 92 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 18 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 429 | 448 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 429 | 445 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 108 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G39830.1 | DA1-related protein 2. | 0 |
| RefSeq | XP_010691604.2 | protein DA1-related 2 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q0WSN2 | Protein DA1-related 2 OS=Arabidopsis thaliana OX=3702 GN=DAR2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5B7A4I6 | LIM zinc-binding domain-containing protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_020978 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology