halophFGD

Basic Information

Locus ID: Lb3G21080

Species & Taxonomic ID: Limonium bicolor & 293754

Genome Assembly: GCA_023374045.1

Description: Ribonuclease H protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr03	379271711	379277738	-	Lb3G21080

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.61	32,591.75 Da	60.08	88.01	-0.30

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd06222	RNase_H_like	2	110	4.58543E-15	IPR044730
CDD	cd06222	RNase_H_like	2	110	4.58543E-15	IPR044730
Pfam	PF13456	Reverse transcriptase-like	26	112	3.2E-14	IPR002156
Pfam	PF13456	Reverse transcriptase-like	26	112	3.2E-14	IPR002156
SUPERFAMILY	SSF53098	Ribonuclease H-like	27	110	9.48E-8	IPR012337
SUPERFAMILY	SSF53098	Ribonuclease H-like	27	110	9.48E-8	IPR012337
Gene3D	G3DSA:3.30.420.10	-	5	119	6.6E-10	IPR036397
Gene3D	G3DSA:3.30.420.10	-	5	119	6.6E-10	IPR036397
MobiDBLite	mobidb-lite	consensus disorder prediction	194	218	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	194	218	-	-

Gene Ontology

Molecular Function:

GO:0003676 (nucleic acid binding) GO:0004523 (RNA-DNA hybrid ribonuclease activity)

KEGG Pathway

KO Term:

K10661 (E3 ubiquitin-protein ligase MARCH6 [EC:2.3.2.27])

Pathway:

ko04141 (Protein processing in endoplasmic reticulum) map04141 (Protein processing in endoplasmic reticulum)

Best hit

Source	Best Hit ID	Description	E-value

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Plumbaginaceae	Limonium bicolor	139	Lb0G36958, Lb0G37625, Lb0G37651, Lb0G37832, Lb1G00074 ... Lb1G01041, Lb1G01284, Lb1G01302, Lb1G01313, Lb1G01909, Lb1G02090, Lb1G02171, Lb1G02262, Lb1G02725, Lb1G03091, Lb1G03104, Lb1G03576, Lb1G03653, Lb1G03691, Lb1G03810, Lb1G04104, Lb1G04204, Lb1G04764, Lb1G04782, Lb1G04978, Lb1G05127, Lb1G05421, Lb1G06522, Lb1G06694, Lb1G06709, Lb1G06915, Lb1G07575, Lb1G07974, Lb2G08452, Lb2G08754, Lb2G08786, Lb2G09330, Lb2G09354, Lb2G09788, Lb2G09791, Lb2G09872, Lb2G10149, Lb2G10277, Lb2G10339, Lb2G10401, Lb2G10547, Lb2G10571, Lb2G10595, Lb2G10645, Lb2G10858, Lb2G11128, Lb2G11176, Lb2G11301, Lb2G11392, Lb2G11722, Lb2G11723, Lb2G11726, Lb2G11880, Lb2G11994, Lb2G12006, Lb2G12180, Lb2G13380, Lb2G13858, Lb2G14192, Lb2G14385, Lb2G14802, Lb2G14815, Lb2G15389, Lb3G15874, Lb3G15888, Lb3G16904, Lb3G17648, Lb3G18076, Lb3G18459, Lb3G18462, Lb3G18835, Lb3G19004, Lb3G19049, Lb3G19141, Lb3G19410, Lb3G19564, Lb3G19669, Lb3G19745, Lb3G19968, Lb3G20348, Lb3G20349, Lb3G20424, Lb3G20556, Lb3G20584, Lb3G20837, Lb3G20990, Lb3G20991, Lb3G21080, Lb4G21491, Lb4G21493, Lb4G21495, Lb4G22778, Lb4G23783, Lb4G23798, Lb4G23803, Lb4G24071, Lb4G24085, Lb4G24086, Lb4G24642, Lb4G24910, Lb4G24972, Lb4G25774, Lb4G25880, Lb5G26602, Lb5G26603, Lb5G26645, Lb5G27050, Lb5G27731, Lb5G27935, Lb5G27936, Lb5G28415, Lb5G29025, Lb5G29564, Lb6G30134, Lb6G30265, Lb6G30266, Lb6G30292, Lb6G30447, Lb6G30649, Lb6G31356, Lb6G31492, Lb6G31691, Lb6G31840, Lb6G32579, Lb7G33114, Lb7G33326, Lb7G33404, Lb7G34305, Lb7G35257, Lb7G35440, Lb7G35441, Lb8G36625, Lb8G36627, Lb8G36629