Basic Information
Locus ID:
Lb3G21045
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 375953047 | 375960422 | + | Lb3G21045 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.69 | 36,274.82 Da | 38.42 | 74.51 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12420 | RRM_RBPMS_like | 172 | 238 | 3.96083E-30 | - |
| CDD | cd12420 | RRM_RBPMS_like | 172 | 238 | 3.96083E-30 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 174 | 241 | 1.4E-9 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 174 | 241 | 1.4E-9 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 131 | 238 | 2.69E-14 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 131 | 238 | 2.69E-14 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 168 | 252 | 2.8E-16 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 168 | 252 | 2.8E-16 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 173 | 247 | 6.2E-4 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 173 | 247 | 6.2E-4 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 172 | 253 | 9.456252 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 172 | 253 | 9.456252 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 39 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 39 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G21320.2 | nucleotide binding;nucleic acid binding. | 0 |
| RefSeq | XP_021774992.1 | nuclear speckle RNA-binding protein A-like isoform X1 [Chenopodium quinoa] | 0 |
| Q6JB11 | Protein MATERNALLY EXPRESSED GENE 5 OS=Zea mays OX=4577 GN=MEG5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J5AUZ5 | RRM domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_030994 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology