Basic Information
Locus ID:
Lb3G21032
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 375393647 | 375398082 | - | Lb3G21032 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.86 | 77,379.48 Da | 47.40 | 70.49 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 248 | 280 | 1.3E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 348 | 383 | 2.3E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 348 | 383 | 2.3E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 248 | 280 | 1.3E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 390 | 425 | 1.5E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 390 | 425 | 1.5E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 247 | 682 | 3.66E-52 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 247 | 682 | 3.66E-52 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 231 | 590 | 2.2E-54 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 231 | 590 | 2.2E-54 | IPR015943 |
| SMART | SM00320 | WD40_4 | 428 | 467 | 1.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 519 | 560 | 3.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 650 | 684 | 450.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 482 | 518 | 30.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 241 | 280 | 3.1E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 387 | 426 | 1.2E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 650 | 684 | 450.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 519 | 560 | 3.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 387 | 426 | 1.2E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 346 | 384 | 2.1E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 346 | 384 | 2.1E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 482 | 518 | 30.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 428 | 467 | 1.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 241 | 280 | 3.1E-8 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 393 | 427 | 9.862871 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 353 | 393 | 11.845179 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 393 | 435 | 12.17936 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 353 | 385 | 9.361965 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 248 | 281 | 12.657402 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 393 | 427 | 9.862871 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 353 | 393 | 11.845179 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 248 | 281 | 12.657402 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 393 | 435 | 12.17936 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 353 | 385 | 9.361965 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 248 | 281 | 15.35409 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 248 | 281 | 15.35409 | IPR001680 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 371 | 385 | 1.5E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 413 | 427 | 1.5E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 267 | 281 | 1.5E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 267 | 281 | 1.5E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 371 | 385 | 1.5E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 413 | 427 | 1.5E-5 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 170 | 185 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 170 | 190 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 170 | 190 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 170 | 185 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G24320.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_002534336.1 | uncharacterized protein LOC8262020 isoform X2 [Ricinus communis] | 0 |
| Q498F0 | WD repeat-containing protein 44 OS=Xenopus laevis OX=8355 GN=wdr44 PE=2 SV=1 | 0 | |
| TrEMBL | A0A438BUH8 | WD repeat-containing protein 44 OS=Vitis vinifera OX=29760 GN=WDR44_1 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology