Basic Information
Locus ID:
Lb3G21004
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
DEAD-box ATP-dependent RNA helicase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 374489413 | 374494579 | + | Lb3G21004 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.27 | 75,163.71 Da | 44.49 | 83.38 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 524 | 629 | 7.49925E-56 | - |
| CDD | cd18787 | SF2_C_DEAD | 524 | 629 | 7.49925E-56 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 524 | 620 | 2.5E-31 | IPR001650 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 524 | 620 | 2.5E-31 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 321 | 487 | 3.2E-47 | IPR011545 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 321 | 487 | 3.2E-47 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 364 | 636 | 8.44E-73 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 364 | 636 | 8.44E-73 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 507 | 662 | 6.5E-50 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 261 | 505 | 1.7E-76 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 261 | 505 | 1.7E-76 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 507 | 662 | 6.5E-50 | IPR027417 |
| SMART | SM00490 | helicmild6 | 540 | 620 | 2.7E-34 | IPR001650 |
| SMART | SM00490 | helicmild6 | 540 | 620 | 2.7E-34 | IPR001650 |
| SMART | SM00487 | ultradead3 | 305 | 515 | 7.6E-59 | IPR014001 |
| SMART | SM00487 | ultradead3 | 305 | 515 | 7.6E-59 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 514 | 659 | 24.824703 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 323 | 498 | 32.169178 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 514 | 659 | 24.824703 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 323 | 498 | 32.169178 | IPR014001 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 444 | 452 | - | IPR000629 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 444 | 452 | - | IPR000629 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 26 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 26 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06480.1 | DEAD box RNA helicase family protein. | 0 |
| RefSeq | XP_007227068.1 | DEAD-box ATP-dependent RNA helicase 46 [Prunus persica] | 0 |
| Q9SQV1 | DEAD-box ATP-dependent RNA helicase 40 OS=Arabidopsis thaliana OX=3702 GN=RH40 PE=2 SV=1 | 0 | |
| TrEMBL | A0A314UR27 | DEAD-box ATP-dependent RNA helicase 46 OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_38093 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology