Basic Information
Locus ID:
Lb3G20991
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Serine threonine-protein phosphatase 7 long form homolog
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 374191979 | 374196630 | - | Lb3G20991 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.28 | 55,780.75 Da | 42.49 | 85.78 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18322 | BTB_POZ_SKP1 | 35 | 149 | 8.52238E-51 | - |
| CDD | cd18322 | BTB_POZ_SKP1 | 35 | 149 | 8.52238E-51 | - |
| Pfam | PF01466 | Skp1 family, dimerisation domain | 135 | 182 | 3.1E-24 | IPR016072 |
| Pfam | PF01466 | Skp1 family, dimerisation domain | 135 | 182 | 3.1E-24 | IPR016072 |
| Pfam | PF03931 | Skp1 family, tetramerisation domain | 35 | 93 | 6.2E-24 | IPR016073 |
| Pfam | PF10536 | Plant mobile domain | 209 | 358 | 7.0E-21 | IPR019557 |
| Pfam | PF03931 | Skp1 family, tetramerisation domain | 35 | 93 | 6.2E-24 | IPR016073 |
| Pfam | PF10536 | Plant mobile domain | 209 | 358 | 7.0E-21 | IPR019557 |
| SUPERFAMILY | SSF54695 | POZ domain | 35 | 96 | 1.15E-18 | IPR011333 |
| SUPERFAMILY | SSF54695 | POZ domain | 35 | 96 | 1.15E-18 | IPR011333 |
| SUPERFAMILY | SSF81382 | Skp1 dimerisation domain-like | 107 | 182 | 4.97E-27 | IPR036296 |
| SUPERFAMILY | SSF81382 | Skp1 dimerisation domain-like | 107 | 182 | 4.97E-27 | IPR036296 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 31 | 185 | 6.6E-61 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 31 | 185 | 6.6E-61 | IPR011333 |
| SMART | SM00512 | skp1_3 | 33 | 134 | 7.3E-44 | IPR001232 |
| SMART | SM00512 | skp1_3 | 33 | 134 | 7.3E-44 | IPR001232 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 436 | 507 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 436 | 454 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 436 | 507 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 436 | 454 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G42190.1 | E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein. Similar to SKP1 in yeast and humans which are involved in mitotic cell cycle control and ubiquitin mediated proteolysis. | 0 |
| RefSeq | XP_047322246.1 | SKP1-like protein 1B [Impatiens glandulifera] | 0 |
| Q9FHW7 | SKP1-like protein 1B OS=Arabidopsis thaliana OX=3702 GN=SKP1B PE=1 SV=1 | 0 | |
| TrEMBL | A0A200QFX5 | SKP1-like protein OS=Macleaya cordata OX=56857 GN=BVC80_6815g2 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||