Basic Information
Locus ID:
Lb3G20908
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 370906978 | 370907902 | + | Lb3G20908 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.90 | 30,556.85 Da | 39.41 | 76.49 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 86 | 129 | 8.93505E-17 | - |
| CDD | cd16461 | RING-H2_EL5_like | 86 | 129 | 8.93505E-17 | - |
| Pfam | PF13639 | Ring finger domain | 86 | 129 | 4.9E-12 | IPR001841 |
| Pfam | PF13639 | Ring finger domain | 86 | 129 | 4.9E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 77 | 136 | 1.49E-20 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 77 | 136 | 1.49E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 47 | 134 | 2.4E-22 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 47 | 134 | 2.4E-22 | IPR013083 |
| SMART | SM00184 | ring_2 | 87 | 128 | 3.9E-7 | IPR001841 |
| SMART | SM00184 | ring_2 | 87 | 128 | 3.9E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 87 | 129 | 11.884405 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 87 | 129 | 11.884405 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 183 | 210 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 265 | 285 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 189 | 210 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 262 | 285 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 41 | 60 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 144 | 164 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 262 | 285 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 41 | 60 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 183 | 210 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 189 | 210 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 265 | 285 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 144 | 164 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G72310.1 | RING/U-box superfamily protein. Encodes a putative RING-H2 zinc finger protein ATL3 (ATL3). | 0 |
| RefSeq | XP_022721656.1 | RING-H2 finger protein ATL3-like [Durio zibethinus] | 0 |
| Q9XF63 | RING-H2 finger protein ATL3 OS=Arabidopsis thaliana OX=3702 GN=ATL3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6P5X1I1 | RING-type E3 ubiquitin transferase OS=Durio zibethinus OX=66656 GN=LOC111279038 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology