Basic Information
Locus ID:
Lb3G20905
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 370839009 | 370839721 | + | Lb3G20905 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.79 | 22,445.41 Da | 32.25 | 101.71 | 0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 108 | 151 | 9.64563E-17 | - |
| CDD | cd16454 | RING-H2_PA-TM-RING | 108 | 151 | 9.64563E-17 | - |
| Pfam | PF13639 | Ring finger domain | 109 | 151 | 3.5E-11 | IPR001841 |
| Pfam | PF13639 | Ring finger domain | 109 | 151 | 3.5E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 85 | 157 | 1.87E-21 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 85 | 157 | 1.87E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 65 | 156 | 4.0E-22 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 65 | 156 | 4.0E-22 | IPR013083 |
| SMART | SM00184 | ring_2 | 109 | 150 | 3.9E-7 | IPR001841 |
| SMART | SM00184 | ring_2 | 109 | 150 | 3.9E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 109 | 151 | 11.884405 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 109 | 151 | 11.884405 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G53820.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021627326.1 | RING-H2 finger protein ATL3 [Manihot esculenta] | 0 |
| P0C035 | RING-H2 finger protein ATL60 OS=Arabidopsis thaliana OX=3702 GN=ATL60 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7C9DYI6 | RING-type E3 ubiquitin transferase OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology