Basic Information
Locus ID:
Lb3G20834
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Heat Stress Transcription Factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 367247385 | 367248702 | + | Lb3G20834 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.91 | 38,501.17 Da | 54.49 | 64.78 | -0.71 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00447 | HSF-type DNA-binding | 25 | 114 | 1.3E-32 | IPR000232 |
| Pfam | PF00447 | HSF-type DNA-binding | 25 | 114 | 1.3E-32 | IPR000232 |
| SUPERFAMILY | SSF46785 | Winged helix DNA-binding domain | 22 | 114 | 9.8E-35 | IPR036390 |
| SUPERFAMILY | SSF46785 | Winged helix DNA-binding domain | 22 | 114 | 9.8E-35 | IPR036390 |
| Gene3D | G3DSA:1.10.10.10 | - | 17 | 116 | 4.0E-38 | IPR036388 |
| Gene3D | G3DSA:1.10.10.10 | - | 17 | 116 | 4.0E-38 | IPR036388 |
| SMART | SM00415 | hsfneu3 | 21 | 114 | 2.2E-61 | IPR000232 |
| SMART | SM00415 | hsfneu3 | 21 | 114 | 2.2E-61 | IPR000232 |
| ProSitePatterns | PS00434 | HSF-type DNA-binding domain signature. | 64 | 88 | - | IPR000232 |
| ProSitePatterns | PS00434 | HSF-type DNA-binding domain signature. | 64 | 88 | - | IPR000232 |
| PRINTS | PR00056 | Heat shock factor (HSF) domain signature | 25 | 48 | 6.2E-20 | IPR000232 |
| PRINTS | PR00056 | Heat shock factor (HSF) domain signature | 25 | 48 | 6.2E-20 | IPR000232 |
| PRINTS | PR00056 | Heat shock factor (HSF) domain signature | 63 | 75 | 6.2E-20 | IPR000232 |
| PRINTS | PR00056 | Heat shock factor (HSF) domain signature | 63 | 75 | 6.2E-20 | IPR000232 |
| PRINTS | PR00056 | Heat shock factor (HSF) domain signature | 76 | 88 | 6.2E-20 | IPR000232 |
| PRINTS | PR00056 | Heat shock factor (HSF) domain signature | 76 | 88 | 6.2E-20 | IPR000232 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G46264.1 | heat shock transcription factor B4. Encodes SCHIZORIZA, a member of Heat Shock Transcription Factor (Hsf) family. Functions as a nuclear factor regulating asymmetry of stem cell divisions. | 0 |
| RefSeq | XP_019174477.1 | PREDICTED: heat stress transcription factor B-4-like [Ipomoea nil] | 0 |
| Q9C635 | Heat stress transcription factor B-4 OS=Arabidopsis thaliana OX=3702 GN=HSFB4 PE=2 SV=1 | 0 | |
| TrEMBL | M1ADP6 | HSF domain class transcription factor OS=Solanum tuberosum OX=4113 GN=102592823 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology