Basic Information
Locus ID:
Lb3G20814
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Belongs to the ubiquitin-conjugating enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 366472999 | 366475521 | - | Lb3G20814 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.28 | 13,930.63 Da | 66.58 | 74.88 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00195 | UBCc | 1 | 114 | 6.64803E-48 | IPR000608 |
| CDD | cd00195 | UBCc | 1 | 114 | 6.64803E-48 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 2 | 112 | 1.6E-39 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 2 | 112 | 1.6E-39 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 1 | 118 | 1.07E-43 | IPR016135 |
| SUPERFAMILY | SSF54495 | UBC-like | 1 | 118 | 1.07E-43 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 1 | 120 | 3.2E-48 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 1 | 120 | 3.2E-48 | IPR016135 |
| SMART | SM00212 | ubc_7 | 1 | 119 | 4.7E-41 | - |
| SMART | SM00212 | ubc_7 | 1 | 119 | 4.7E-41 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 1 | 119 | 39.603638 | IPR000608 |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 1 | 119 | 39.603638 | IPR000608 |
| ProSitePatterns | PS00183 | Ubiquitin-conjugating (UBC) active site signature. | 44 | 59 | - | IPR023313 |
| ProSitePatterns | PS00183 | Ubiquitin-conjugating (UBC) active site signature. | 44 | 59 | - | IPR023313 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G57870.1 | sumo conjugation enzyme 1. Encodes a SUMO liagse that directs the attachment of the small protein SUMO to target proteins via an isopeptide bond. This enzyme is localized to the nucleus and plants with reduced levels of this protein show higher sensitivity to ABA in root growth inhibition assays. It has high similarity to the yeast UBC9 SUMO ligase and is sometimes referred to by that name. | 0 |
| RefSeq | XP_039785426.1 | SUMO-conjugating enzyme SCE1-like [Panicum virgatum] | 0 |
| Q42551 | SUMO-conjugating enzyme SCE1 OS=Arabidopsis thaliana OX=3702 GN=SCE1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8T0NSA4 | UBC core domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_9KG312000 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg11603, jg19671, jg30672, jg40006 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_16697, gene_16698 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah027413 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g127260 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg13066, Sbi_jg52820 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg9061 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00010194 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl33907, Sgl39274 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000002668, gene:ENSEOMG00000028518 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0025330, CQ.Regalona.r1.6BG0026860 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30044920, pistato.v30205830 |
| Apiaceae | Apium graveolens | 2 | Ag4G01110, Ag5G00297 |
| Arecaceae | Cocos nucifera | 3 | COCNU_02G019900, COCNU_07G007810, contig69644838G000010 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103702696, gene-LOC103719655, gene-LOC103720898 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_03.2993.V1.1, AsparagusV1_04.2413.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri13G12998, Ftri18G29250 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G57870.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10006281m.g.v1.0, Thhalv10006282m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp5g01130.v2.2, Sp5g04850.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB06g055450.2N, BniB06g061590.2N, BniB06g063740.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G1342 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G1348 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno12g03530 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0218s00011.v1.0, Dusal.0783s00006.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g03650 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 3 | nbisL1-mrna-10050, nbisL1-mrna-1239, nbisL1-mrna-6644 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG06.400, evm.TU.LG06.401 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00023884, Pov_00029182, Pov_00038191 |
| Plumbaginaceae | Limonium bicolor | 5 | Lb1G06301, Lb1G06302, Lb3G20814, Lb8G36075, Lb8G36081 |
| Poaceae | Echinochloa crus-galli | 13 | AH01.3087, AH01.5124, AH09.2036, AH09.2037, BH01.3429 ... |
| Poaceae | Eleusine coracana subsp. coracana | 9 | gene-QOZ80_2AG0114990, gene-QOZ80_2BG0168770 ... |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.1HG0054200.1, HORVU.MOREX.r3.2HG0186230.1 ... |
| Poaceae | Lolium multiflorum | 6 | gene-QYE76_007902, gene-QYE76_012240, gene-QYE76_045735 ... |
| Poaceae | Oryza coarctata | 6 | Oco05G001350, Oco06G001310, Oco07G013910, Oco17G000630 ... |
| Poaceae | Oryza sativa | 3 | LOC_Os03g03130.1, LOC_Os04g49130.1, LOC_Os10g39120.1 |
| Poaceae | Paspalum vaginatum | 5 | gene-BS78_01G302700, gene-BS78_01G500500 ... |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0100580, Pt_Chr0100625, Pt_Chr0703598, Pt_Chr0703599 |
| Poaceae | Sporobolus alterniflorus | 11 | Chr04G005940, Chr06G028780, Chr07G005670, Chr09G003630 ... |
| Poaceae | Thinopyrum elongatum | 3 | Tel1E01G344400, Tel2E01G678200, Tel4E01G568500 |
| Poaceae | Triticum dicoccoides | 6 | gene_TRIDC1AG030250, gene_TRIDC1BG035760 ... |
| Poaceae | Triticum aestivum | 9 | TraesCS1A02G199500.1, TraesCS1B02G214400.2 ... |
| Poaceae | Zea mays | 6 | Zm00001eb001680_P001, Zm00001eb022000_P001 ... |
| Poaceae | Zoysia japonica | 5 | nbis-gene-22645, nbis-gene-3102, nbis-gene-36175 ... |
| Poaceae | Zoysia macrostachya | 5 | Zma_g12809, Zma_g15591, Zma_g20294, Zma_g2202, Zma_g4549 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG04.1038, evm.TU.LG05.1586, evm.TU.LG05.543 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc09g04540 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.60424.19, evm.TU.Scaffold_3_RagTag.147 ... |
| Rhizophoraceae | Carallia pectinifolia | 5 | nbisL1-mrna-17292, nbisL1-mrna-19195, nbisL1-mrna-630 ... |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-14113, nbisL1-mrna-8427 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-11926, nbisL1-mrna-6096 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000011l.1130, evm.TU.utg000019l.1016 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00008160, Maker00012628 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-15487, nbisL1-mrna-6418 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-2210, nbisL1-mrna-3242 |
| Salicaceae | Populus euphratica | 2 | populus_peu14416, populus_peu32008 |
| Solanaceae | Lycium barbarum | 6 | gene-LOC132604084, gene-LOC132604085, gene-LOC132617189 ... |
| Solanaceae | Solanum chilense | 5 | SOLCI000913500, SOLCI001699600, SOLCI001781100 ... |
| Solanaceae | Solanum pennellii | 5 | gene-LOC107007623, gene-LOC107011237, gene-LOC107012122 ... |
| Tamaricaceae | Reaumuria soongarica | 3 | STRG.2835_chr03_+, STRG.6486_chr03_-, gene_1749 |
| Tamaricaceae | Tamarix chinensis | 2 | TC04G1767, TC04G2563 |
| Zosteraceae | Zostera marina | 1 | Zosma05g12070.v3.1 |