Basic Information
Locus ID:
Lb3G20752
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 362157112 | 362161924 | + | Lb3G20752 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.97 | 64,564.70 Da | 50.49 | 90.87 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 259 | 551 | 1.20852E-46 | - |
| CDD | cd00200 | WD40 | 259 | 551 | 1.20852E-46 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 343 | 381 | 0.25 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 470 | 508 | 0.069 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 304 | 339 | 0.069 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 516 | 551 | 2.4E-8 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 470 | 508 | 0.069 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 257 | 293 | 1.8E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 516 | 551 | 2.4E-8 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 343 | 381 | 0.25 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 304 | 339 | 0.069 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 257 | 293 | 1.8E-7 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 254 | 551 | 3.46E-63 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 254 | 551 | 3.46E-63 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 517 | 573 | 3.2E-8 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 517 | 573 | 3.2E-8 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 251 | 516 | 4.1E-56 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 251 | 516 | 4.1E-56 | IPR015943 |
| SMART | SM00320 | WD40_4 | 255 | 294 | 1.3E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 467 | 509 | 1.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 300 | 339 | 4.1E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 342 | 381 | 0.019 | IPR001680 |
| SMART | SM00320 | WD40_4 | 300 | 339 | 4.1E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 512 | 552 | 5.7E-11 | IPR001680 |
| SMART | SM00320 | WD40_4 | 424 | 463 | 42.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 255 | 294 | 1.3E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 383 | 423 | 370.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 512 | 552 | 5.7E-11 | IPR001680 |
| SMART | SM00320 | WD40_4 | 467 | 509 | 1.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 383 | 423 | 370.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 424 | 463 | 42.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 342 | 381 | 0.019 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 60 | 92 | 8.353152 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 349 | 383 | 8.503359 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 307 | 344 | 10.653776 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 519 | 555 | 14.485216 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 349 | 383 | 8.503359 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 307 | 344 | 10.653776 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 262 | 303 | 14.685726 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 60 | 92 | 8.353152 | IPR006594 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 262 | 296 | 11.89286 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 307 | 348 | 13.950525 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 307 | 348 | 13.950525 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 519 | 555 | 14.485216 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 519 | 555 | 11.971952 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 262 | 296 | 11.89286 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 262 | 303 | 14.685726 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 102 | 149 | 9.205828 | IPR006595 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 102 | 149 | 9.205828 | IPR006595 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 519 | 555 | 11.971952 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 281 | 295 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 281 | 295 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 539 | 553 | 1.4E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 281 | 295 | 1.4E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 496 | 510 | 1.4E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 281 | 295 | 1.4E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 496 | 510 | 1.4E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 539 | 553 | 1.4E-5 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G08560.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_034200382.1 | WD repeat-containing protein 26 homolog [Prunus dulcis] | 0 |
| Q9FNN2 | WD repeat-containing protein 26 homolog OS=Arabidopsis thaliana OX=3702 GN=WDR26 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5C7HK83 | WD repeat-containing protein 26-like OS=Acer yangbiense OX=1000413 GN=EZV62_018753 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology