Basic Information
Locus ID:
Lb3G20732
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
SNF2 family N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 358179716 | 358186418 | + | Lb3G20732 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.78 | 104,503.97 Da | 51.82 | 79.33 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18008 | DEXDc_SHPRH-like | 255 | 567 | 3.7607E-63 | - |
| CDD | cd18793 | SF2_C_SNF | 828 | 933 | 3.06298E-54 | - |
| CDD | cd18793 | SF2_C_SNF | 828 | 933 | 3.06298E-54 | - |
| CDD | cd18008 | DEXDc_SHPRH-like | 255 | 567 | 3.7607E-63 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 822 | 923 | 1.9E-16 | IPR001650 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 822 | 923 | 1.9E-16 | IPR001650 |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 681 | 725 | 1.1E-6 | - |
| Pfam | PF00176 | SNF2 family N-terminal domain | 270 | 644 | 2.3E-49 | IPR000330 |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 681 | 725 | 1.1E-6 | - |
| Pfam | PF00176 | SNF2 family N-terminal domain | 270 | 644 | 2.3E-49 | IPR000330 |
| SUPERFAMILY | SSF57850 | RING/U-box | 677 | 727 | 9.94E-11 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 576 | 948 | 3.72E-51 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 576 | 948 | 3.72E-51 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 239 | 567 | 4.3E-36 | IPR027417 |
| SUPERFAMILY | SSF57850 | RING/U-box | 677 | 727 | 9.94E-11 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 239 | 567 | 4.3E-36 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 486 | 568 | 4.4E-16 | IPR038718 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 651 | 745 | 5.1E-11 | IPR013083 |
| Gene3D | G3DSA:3.40.50.10810 | - | 342 | 436 | 1.7E-10 | IPR038718 |
| Gene3D | G3DSA:3.40.50.300 | - | 746 | 948 | 9.9E-54 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 342 | 436 | 1.7E-10 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 225 | 319 | 1.5E-11 | IPR038718 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 651 | 745 | 5.1E-11 | IPR013083 |
| Gene3D | G3DSA:3.40.50.300 | - | 746 | 948 | 9.9E-54 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 225 | 319 | 1.5E-11 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 486 | 568 | 4.4E-16 | IPR038718 |
| SMART | SM00184 | ring_2 | 683 | 721 | 0.0037 | IPR001841 |
| SMART | SM00184 | ring_2 | 683 | 721 | 0.0037 | IPR001841 |
| SMART | SM00487 | ultradead3 | 251 | 537 | 3.2E-15 | IPR014001 |
| SMART | SM00490 | helicmild6 | 840 | 923 | 3.6E-18 | IPR001650 |
| SMART | SM00487 | ultradead3 | 251 | 537 | 3.2E-15 | IPR014001 |
| SMART | SM00490 | helicmild6 | 840 | 923 | 3.6E-18 | IPR001650 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 683 | 722 | 11.338544 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 683 | 722 | 11.338544 | IPR001841 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 805 | 949 | 13.879983 | IPR001650 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 805 | 949 | 13.879983 | IPR001650 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 698 | 707 | - | IPR017907 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 698 | 707 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 78 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 448 | 467 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 428 | 444 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 33 | 55 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 428 | 467 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 428 | 467 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 428 | 444 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 78 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 448 | 467 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 33 | 55 | - | - |
| Coils | Coil | Coil | 295 | 318 | - | - |
| Coils | Coil | Coil | 295 | 318 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G50410.1 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_007227010.1 | helicase-like transcription factor CHR28 isoform X3 [Prunus persica] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A251R7U3 | Helicase-like transcription factor CHR28 OS=Prunus persica OX=3760 GN=PRUPE_1G350600 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology