Basic Information
Locus ID:
Lb3G20713
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Seven in absentia protein family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 356546494 | 356551031 | - | Lb3G20713 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.17 | 35,246.19 Da | 42.07 | 73.94 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16571 | RING-HC_SIAHs | 60 | 98 | 9.06967E-14 | - |
| CDD | cd16571 | RING-HC_SIAHs | 60 | 98 | 9.06967E-14 | - |
| Pfam | PF03145 | Seven in absentia protein family | 104 | 302 | 3.4E-74 | IPR018121 |
| Pfam | PF03145 | Seven in absentia protein family | 104 | 302 | 3.4E-74 | IPR018121 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 115 | 306 | 3.33E-38 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 55 | 102 | 3.03E-5 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 55 | 102 | 3.03E-5 | - |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 115 | 306 | 3.33E-38 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 171 | 303 | 8.8E-35 | IPR008974 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 26 | 114 | 7.0E-7 | IPR013083 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 171 | 303 | 8.8E-35 | IPR008974 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 115 | 170 | 1.2E-15 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 115 | 170 | 1.2E-15 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 26 | 114 | 7.0E-7 | IPR013083 |
| ProSiteProfiles | PS51081 | Zinc finger SIAH-type profile. | 115 | 175 | 13.775948 | IPR013010 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 62 | 98 | 9.435407 | IPR001841 |
| ProSiteProfiles | PS51081 | Zinc finger SIAH-type profile. | 115 | 175 | 13.775948 | IPR013010 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 62 | 98 | 9.435407 | IPR001841 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G58040.1 | seven in absentia of Arabidopsis 2. Encodes a RING finger domain containing protein that interacts with AtRAP2.2. | 0 |
| RefSeq | XP_030510944.1 | E3 ubiquitin-protein ligase SINAT2 [Cannabis sativa] | 0 |
| Q9M2P4 | E3 ubiquitin-protein ligase SINAT2 OS=Arabidopsis thaliana OX=3702 GN=SINAT2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803Q9Y5 | RING-type E3 ubiquitin transferase OS=Cannabis sativa OX=3483 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology