Basic Information
Locus ID:
Lb3G20591
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
PHD finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 346039875 | 346045348 | - | Lb3G20591 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.03 | 45,622.73 Da | 46.47 | 69.46 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd15505 | PHD_ING | 355 | 402 | 3.46322E-24 | - |
| CDD | cd15505 | PHD_ING | 355 | 402 | 3.46322E-24 | - |
| Pfam | PF13359 | DDE superfamily endonuclease | 193 | 241 | 5.6E-7 | IPR027806 |
| Pfam | PF13359 | DDE superfamily endonuclease | 193 | 241 | 5.6E-7 | IPR027806 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 332 | 403 | 4.22E-19 | IPR011011 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 332 | 403 | 4.22E-19 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 347 | 405 | 9.9E-25 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 347 | 405 | 9.9E-25 | IPR013083 |
| SMART | SM00249 | PHD_3 | 355 | 403 | 1.0E-10 | IPR001965 |
| SMART | SM00249 | PHD_3 | 355 | 403 | 1.0E-10 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 353 | 405 | 8.9649 | IPR019787 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 353 | 405 | 8.9649 | IPR019787 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G54390.6 | PHD finger protein-related. ING2 encodes a member of the Inhibitor of Growth family of nuclear-localized PhD domain containing homeodomain proteins. Binds to H3K4 di or trimethylated DNA. | 0 |
| RefSeq | XP_010672062.1 | PHD finger protein ING2 [Beta vulgaris subsp. vulgaris] | 0 |
| B3H615 | PHD finger protein ING2 OS=Arabidopsis thaliana OX=3702 GN=ING2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2J926 | PHD finger protein ING OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_18884 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah021209 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g056270 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg59576, Sbi_jg63084 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg23814 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00024360 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl02955, Sgl02956, Sgl08094, Sgl08095 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000012617, gene:ENSEOMG00000031147 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0018430, CQ.Regalona.r1.3BG0017810 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30088450 |
| Apiaceae | Apium graveolens | 3 | Ag2G01417, Ag3G02857, Ag4G01991 |
| Arecaceae | Cocos nucifera | 1 | COCNU_09G008260 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103705493 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.1710.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri11G23761, Ftri12G21961 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G54390.2 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10003462m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g07100.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB01g032410.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G1586 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G1651 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno15g05590 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g11070 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-7832 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.2077 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb3G20591, Lb3G20593 |
| Poaceae | Echinochloa crus-galli | 3 | BH01.739, CH01.736, Contig309.93 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0216190, gene-QOZ80_3BG0261480 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0510370.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_061869 |
| Poaceae | Oryza coarctata | 2 | Oco05G023540, Oco06G024440 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g53700.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G081800 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0107153 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr01G005280, Chr04G028530, Chr07G027500, Chr12G037690 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G615100 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG056510, gene_TRIDC5BG060570 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G386800.1, TraesCS5B02G391700.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb057160_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-15057 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g487 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG07.2121, evm.TU.LG15.1010 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc07g09940 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_1_RagTag.410 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-3221, nbisL1-mrna-7775 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-16084 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-5443 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000012l.248 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00011462 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-8549 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-560 |
| Salicaceae | Populus euphratica | 3 | populus_peu16082, populus_peu19394, populus_peu19395 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132607551 |
| Solanaceae | Solanum chilense | 1 | SOLCI003859600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107032008 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_2739 |
| Tamaricaceae | Tamarix chinensis | 1 | TC11G0368 |
| Zosteraceae | Zostera marina | 1 | Zosma01g07310.v3.1 |