Basic Information
Locus ID:
Lb3G20547
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
G3BP-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 340636304 | 340640960 | - | Lb3G20547 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.13 | 49,659.41 Da | 48.00 | 59.67 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00590 | RRM_SF | 317 | 388 | 1.6851E-10 | - |
| CDD | cd00590 | RRM_SF | 317 | 388 | 1.6851E-10 | - |
| CDD | cd00780 | NTF2 | 7 | 127 | 3.27546E-36 | IPR018222 |
| CDD | cd00780 | NTF2 | 7 | 127 | 3.27546E-36 | IPR018222 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 317 | 376 | 1.6E-5 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 317 | 376 | 1.6E-5 | IPR000504 |
| Pfam | PF02136 | Nuclear transport factor 2 (NTF2) domain | 11 | 125 | 8.2E-24 | IPR002075 |
| Pfam | PF02136 | Nuclear transport factor 2 (NTF2) domain | 11 | 125 | 8.2E-24 | IPR002075 |
| SUPERFAMILY | SSF54427 | NTF2-like | 7 | 125 | 6.14E-32 | IPR032710 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 309 | 421 | 3.53E-14 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 309 | 421 | 3.53E-14 | IPR035979 |
| SUPERFAMILY | SSF54427 | NTF2-like | 7 | 125 | 6.14E-32 | IPR032710 |
| Gene3D | G3DSA:3.10.450.50 | - | 1 | 129 | 5.3E-34 | - |
| Gene3D | G3DSA:3.30.70.330 | - | 300 | 448 | 2.5E-12 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 300 | 448 | 2.5E-12 | IPR012677 |
| Gene3D | G3DSA:3.10.450.50 | - | 1 | 129 | 5.3E-34 | - |
| SMART | SM00360 | rrm1_1 | 316 | 388 | 5.7E-8 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 316 | 388 | 5.7E-8 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 315 | 399 | 10.718352 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 315 | 399 | 10.718352 | IPR000504 |
| ProSiteProfiles | PS50177 | Nuclear transport factor 2 domain profile. | 11 | 125 | 25.442947 | IPR018222 |
| ProSiteProfiles | PS50177 | Nuclear transport factor 2 domain profile. | 11 | 125 | 25.442947 | IPR018222 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 391 | 451 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 391 | 451 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G43960.1 | Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain. | 0 |
| RefSeq | XP_021770786.1 | putative G3BP-like protein [Chenopodium quinoa] | 0 |
| Q9FME2 | Nuclear transport factor 2 OS=Arabidopsis thaliana OX=3702 GN=NTF2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803LS45 | G3BP-like protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology