Basic Information
Locus ID:
Lb3G20509
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
PAPA-1-like conserved region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 335554499 | 335556007 | + | Lb3G20509 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.71 | 19,207.97 Da | 60.48 | 57.47 | -1.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04438 | HIT zinc finger | 123 | 154 | 1.2E-7 | IPR007529 |
| Pfam | PF04795 | PAPA-1-like conserved region | 24 | 107 | 3.8E-21 | IPR006880 |
| Pfam | PF04438 | HIT zinc finger | 123 | 154 | 1.2E-7 | IPR007529 |
| Pfam | PF04795 | PAPA-1-like conserved region | 24 | 107 | 3.8E-21 | IPR006880 |
| SMART | SM01406 | PAPA_1_2 | 24 | 107 | 6.4E-29 | IPR006880 |
| SMART | SM01406 | PAPA_1_2 | 24 | 107 | 6.4E-29 | IPR006880 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 53 | 82 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 53 | 79 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 53 | 79 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 53 | 82 | - | - |
| Coils | Coil | Coil | 63 | 83 | - | - |
| Coils | Coil | Coil | 30 | 50 | - | - |
| Coils | Coil | Coil | 30 | 50 | - | - |
| Coils | Coil | Coil | 63 | 83 | - | - |
Gene Ontology
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G56460.1 | HIT zinc finger ;PAPA-1-like conserved region. | 0 |
| RefSeq | XP_015891755.2 | uncharacterized protein LOC107426162 [Ziziphus jujuba var. spinosa] | 0 |
| TrEMBL | A0A5J5BQ17 | PAPA-1 domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_020037 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology