Basic Information
Locus ID:
Lb3G20488
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
transposition, RNA-mediated
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 332584546 | 332591599 | + | Lb3G20488 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.38 | 41,695.22 Da | 33.49 | 75.16 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09272 | RNase_HI_RT_Ty1 | 248 | 323 | 3.06734E-22 | - |
| CDD | cd09272 | RNase_HI_RT_Ty1 | 248 | 323 | 3.06734E-22 | - |
| Pfam | PF03004 | Plant transposase (Ptta/En/Spm family) | 70 | 173 | 4.2E-17 | IPR004252 |
| Pfam | PF03004 | Plant transposase (Ptta/En/Spm family) | 70 | 173 | 4.2E-17 | IPR004252 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_043625707.1 | uncharacterized protein LOC122597140 [Erigeron canadensis] | 0 |
| TrEMBL | A0A1R3KAF0 | Transposase, Ptta/En/Spm, plant OS=Corchorus olitorius OX=93759 GN=COLO4_09996 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||